miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1487 5' -52.5 NC_001335.1 + 716 0.73 0.457868
Target:  5'- cUGGACGAacaugccgaAGGCGGCgCAGCuauGGAACgucuACCg -3'
miRNA:   3'- -ACCUGCU---------UCCGUUG-GUCG---UCUUG----UGG- -5'
1487 5' -52.5 NC_001335.1 + 1115 0.67 0.775078
Target:  5'- cGGAacCGGAGcacGCAACC-GCAGAgGCGCUg -3'
miRNA:   3'- aCCU--GCUUC---CGUUGGuCGUCU-UGUGG- -5'
1487 5' -52.5 NC_001335.1 + 1200 0.67 0.794367
Target:  5'- gGGagcaGCGGAGGCGGCaagggaaCGGCA--GCGCCg -3'
miRNA:   3'- aCC----UGCUUCCGUUG-------GUCGUcuUGUGG- -5'
1487 5' -52.5 NC_001335.1 + 1266 0.66 0.814934
Target:  5'- gUGGAgcCGgcGGCGguGgCAGCAGccccAACACCc -3'
miRNA:   3'- -ACCU--GCuuCCGU--UgGUCGUC----UUGUGG- -5'
1487 5' -52.5 NC_001335.1 + 1368 0.69 0.677501
Target:  5'- cGGugGggGGC-ACCGGgguguUGGGGCugCu -3'
miRNA:   3'- aCCugCuuCCGuUGGUC-----GUCUUGugG- -5'
1487 5' -52.5 NC_001335.1 + 2585 0.7 0.632423
Target:  5'- cGGAgGAA-GCGACCAcCcGAACGCCa -3'
miRNA:   3'- aCCUgCUUcCGUUGGUcGuCUUGUGG- -5'
1487 5' -52.5 NC_001335.1 + 3331 0.66 0.824421
Target:  5'- aUGGuccaGCGGAagucccGGCcuguGACCAgGCAGAGCAUCu -3'
miRNA:   3'- -ACC----UGCUU------CCG----UUGGU-CGUCUUGUGG- -5'
1487 5' -52.5 NC_001335.1 + 4086 0.72 0.488978
Target:  5'- -cGGCG-AGGCAGCCGGCGGcGAUGCa -3'
miRNA:   3'- acCUGCuUCCGUUGGUCGUC-UUGUGg -5'
1487 5' -52.5 NC_001335.1 + 4164 0.67 0.808173
Target:  5'- aUGGugGGccagacggccuucGGGCcguccccugacguguAGCUcaauGGCAGAGCGCCc -3'
miRNA:   3'- -ACCugCU-------------UCCG---------------UUGG----UCGUCUUGUGG- -5'
1487 5' -52.5 NC_001335.1 + 4823 0.7 0.59857
Target:  5'- cGGAUGccccGAGGCgGGCCAGCGGccuUGCCg -3'
miRNA:   3'- aCCUGC----UUCCG-UUGGUCGUCuu-GUGG- -5'
1487 5' -52.5 NC_001335.1 + 5201 0.7 0.621125
Target:  5'- cUGG-UGAAGGCGcuauCUGGCAGcuACACCa -3'
miRNA:   3'- -ACCuGCUUCCGUu---GGUCGUCu-UGUGG- -5'
1487 5' -52.5 NC_001335.1 + 5338 0.7 0.621125
Target:  5'- uUGGGCGugaagcgcgacGAGGUGACCAaGCGGGucUACCa -3'
miRNA:   3'- -ACCUGC-----------UUCCGUUGGU-CGUCUu-GUGG- -5'
1487 5' -52.5 NC_001335.1 + 5686 0.67 0.785305
Target:  5'- aGGGCGucGAGcaggugcucGCGGCCAgGCAGAGUGCCg -3'
miRNA:   3'- aCCUGC--UUC---------CGUUGGU-CGUCUUGUGG- -5'
1487 5' -52.5 NC_001335.1 + 7675 0.67 0.805245
Target:  5'- aGGugGAgucgccucGGGCGAUgAGCAGGcccuCGCg -3'
miRNA:   3'- aCCugCU--------UCCGUUGgUCGUCUu---GUGg -5'
1487 5' -52.5 NC_001335.1 + 9269 0.72 0.468123
Target:  5'- aGGACgcuGAGGGCAAgauCCAGCAGuucucuGCAgCCg -3'
miRNA:   3'- aCCUG---CUUCCGUU---GGUCGUCu-----UGU-GG- -5'
1487 5' -52.5 NC_001335.1 + 10285 0.74 0.408494
Target:  5'- cUGGGCGAGGGUcGCCAcCGGGcgcgaaacauGCGCCu -3'
miRNA:   3'- -ACCUGCUUCCGuUGGUcGUCU----------UGUGG- -5'
1487 5' -52.5 NC_001335.1 + 11564 0.66 0.842745
Target:  5'- gUGGAucggUGAAGGCGACaugaAGCccauCACCa -3'
miRNA:   3'- -ACCU----GCUUCCGUUGg---UCGucuuGUGG- -5'
1487 5' -52.5 NC_001335.1 + 11817 0.68 0.721849
Target:  5'- gUGGAccCGGAcGGC-ACCGGCuccAACGCCg -3'
miRNA:   3'- -ACCU--GCUU-CCGuUGGUCGuc-UUGUGG- -5'
1487 5' -52.5 NC_001335.1 + 13529 0.66 0.842745
Target:  5'- cGaGACGAGGGacgccguccgaGACgAGCGGAACAa- -3'
miRNA:   3'- aC-CUGCUUCCg----------UUGgUCGUCUUGUgg -5'
1487 5' -52.5 NC_001335.1 + 14403 0.68 0.721849
Target:  5'- uUGGACGAGcgucGGCcacACCAGCcGAgGCACg -3'
miRNA:   3'- -ACCUGCUU----CCGu--UGGUCGuCU-UGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.