miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1487 5' -52.5 NC_001335.1 + 22717 1.14 0.000829
Target:  5'- aUGGACGAAGGCAACCAGCAGAACACCg -3'
miRNA:   3'- -ACCUGCUUCCGUUGGUCGUCUUGUGG- -5'
1487 5' -52.5 NC_001335.1 + 32322 0.69 0.66627
Target:  5'- uUGGugGAacgAGGuCAGCCAG-GGGGCAgCg -3'
miRNA:   3'- -ACCugCU---UCC-GUUGGUCgUCUUGUgG- -5'
1487 5' -52.5 NC_001335.1 + 20464 0.69 0.677501
Target:  5'- cUGGcaucaACGAGGGCAucucgGCCcuGguGAACAUCg -3'
miRNA:   3'- -ACC-----UGCUUCCGU-----UGGu-CguCUUGUGG- -5'
1487 5' -52.5 NC_001335.1 + 37693 0.66 0.851562
Target:  5'- gGGACGGGuguacaccGUGACCGGCGcGAACAgCg -3'
miRNA:   3'- aCCUGCUUc-------CGUUGGUCGU-CUUGUgG- -5'
1487 5' -52.5 NC_001335.1 + 716 0.73 0.457868
Target:  5'- cUGGACGAacaugccgaAGGCGGCgCAGCuauGGAACgucuACCg -3'
miRNA:   3'- -ACCUGCU---------UCCGUUG-GUCG---UCUUG----UGG- -5'
1487 5' -52.5 NC_001335.1 + 9269 0.72 0.468123
Target:  5'- aGGACgcuGAGGGCAAgauCCAGCAGuucucuGCAgCCg -3'
miRNA:   3'- aCCUG---CUUCCGUU---GGUCGUCu-----UGU-GG- -5'
1487 5' -52.5 NC_001335.1 + 48302 0.72 0.510258
Target:  5'- cGGcCGAAccacacccuuGGCGuggGCCAGCAGGACgugGCCg -3'
miRNA:   3'- aCCuGCUU----------CCGU---UGGUCGUCUUG---UGG- -5'
1487 5' -52.5 NC_001335.1 + 48778 0.72 0.521042
Target:  5'- cGGGCGGcgcaagccucgAGGUggUCgAGCAGGACGCg -3'
miRNA:   3'- aCCUGCU-----------UCCGuuGG-UCGUCUUGUGg -5'
1487 5' -52.5 NC_001335.1 + 4823 0.7 0.59857
Target:  5'- cGGAUGccccGAGGCgGGCCAGCGGccuUGCCg -3'
miRNA:   3'- aCCUGC----UUCCG-UUGGUCGUCuu-GUGG- -5'
1487 5' -52.5 NC_001335.1 + 37846 0.69 0.655007
Target:  5'- gGGAUGAuucGGGCGuUCGGCAGcgucuuCGCCa -3'
miRNA:   3'- aCCUGCU---UCCGUuGGUCGUCuu----GUGG- -5'
1487 5' -52.5 NC_001335.1 + 5201 0.7 0.621125
Target:  5'- cUGG-UGAAGGCGcuauCUGGCAGcuACACCa -3'
miRNA:   3'- -ACCuGCUUCCGUu---GGUCGUCu-UGUGG- -5'
1487 5' -52.5 NC_001335.1 + 24918 0.71 0.564986
Target:  5'- aGGACGuuguAGGCAuGCCGGCGG-GCAg- -3'
miRNA:   3'- aCCUGCu---UCCGU-UGGUCGUCuUGUgg -5'
1487 5' -52.5 NC_001335.1 + 22559 0.77 0.274734
Target:  5'- cGGAgcugcagcguCGAcuGGaCAACCAGCAGAACGCUg -3'
miRNA:   3'- aCCU----------GCUu-CC-GUUGGUCGUCUUGUGG- -5'
1487 5' -52.5 NC_001335.1 + 16285 0.7 0.621125
Target:  5'- aUGGACGGcaucaAGGCAGCC-GCcucGACGCUg -3'
miRNA:   3'- -ACCUGCU-----UCCGUUGGuCGuc-UUGUGG- -5'
1487 5' -52.5 NC_001335.1 + 10285 0.74 0.408494
Target:  5'- cUGGGCGAGGGUcGCCAcCGGGcgcgaaacauGCGCCu -3'
miRNA:   3'- -ACCUGCUUCCGuUGGUcGUCU----------UGUGG- -5'
1487 5' -52.5 NC_001335.1 + 28093 0.71 0.531915
Target:  5'- gGGACGuugucGGGGCGuUCGGCGGuguaGACGCCg -3'
miRNA:   3'- aCCUGC-----UUCCGUuGGUCGUC----UUGUGG- -5'
1487 5' -52.5 NC_001335.1 + 2585 0.7 0.632423
Target:  5'- cGGAgGAA-GCGACCAcCcGAACGCCa -3'
miRNA:   3'- aCCUgCUUcCGUUGGUcGuCUUGUGG- -5'
1487 5' -52.5 NC_001335.1 + 21656 0.69 0.66627
Target:  5'- cGGACGAGcacGCAAgcaCAGCAGuGACAUCg -3'
miRNA:   3'- aCCUGCUUc--CGUUg--GUCGUC-UUGUGG- -5'
1487 5' -52.5 NC_001335.1 + 18068 0.73 0.427848
Target:  5'- uUGG-UGAAGGCAGCCuccgGGCuGAugagcGCACCg -3'
miRNA:   3'- -ACCuGCUUCCGUUGG----UCGuCU-----UGUGG- -5'
1487 5' -52.5 NC_001335.1 + 4086 0.72 0.488978
Target:  5'- -cGGCG-AGGCAGCCGGCGGcGAUGCa -3'
miRNA:   3'- acCUGCuUCCGUUGGUCGUC-UUGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.