miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1487 5' -52.5 NC_001335.1 + 22717 1.14 0.000829
Target:  5'- aUGGACGAAGGCAACCAGCAGAACACCg -3'
miRNA:   3'- -ACCUGCUUCCGUUGGUCGUCUUGUGG- -5'
1487 5' -52.5 NC_001335.1 + 37261 0.82 0.126727
Target:  5'- aGGACGAgcgguaucccaagGGGCcucGCCAGUGGGACACCu -3'
miRNA:   3'- aCCUGCU-------------UCCGu--UGGUCGUCUUGUGG- -5'
1487 5' -52.5 NC_001335.1 + 44722 0.79 0.199237
Target:  5'- aGGACGGuugaccaccAGGCAGaucguCCAGCAGAACugGCCg -3'
miRNA:   3'- aCCUGCU---------UCCGUU-----GGUCGUCUUG--UGG- -5'
1487 5' -52.5 NC_001335.1 + 15298 0.77 0.247294
Target:  5'- uUGGGCuucguGGCGAUCAGcCGGAACGCCu -3'
miRNA:   3'- -ACCUGcuu--CCGUUGGUC-GUCUUGUGG- -5'
1487 5' -52.5 NC_001335.1 + 22559 0.77 0.274734
Target:  5'- cGGAgcugcagcguCGAcuGGaCAACCAGCAGAACGCUg -3'
miRNA:   3'- aCCU----------GCUu-CC-GUUGGUCGUCUUGUGG- -5'
1487 5' -52.5 NC_001335.1 + 25207 0.75 0.353841
Target:  5'- cGGGCGAagaAGGCAGCC-GCc-AGCGCCa -3'
miRNA:   3'- aCCUGCU---UCCGUUGGuCGucUUGUGG- -5'
1487 5' -52.5 NC_001335.1 + 10285 0.74 0.408494
Target:  5'- cUGGGCGAGGGUcGCCAcCGGGcgcgaaacauGCGCCu -3'
miRNA:   3'- -ACCUGCUUCCGuUGGUcGUCU----------UGUGG- -5'
1487 5' -52.5 NC_001335.1 + 18068 0.73 0.427848
Target:  5'- uUGG-UGAAGGCAGCCuccgGGCuGAugagcGCACCg -3'
miRNA:   3'- -ACCuGCUUCCGUUGG----UCGuCU-----UGUGG- -5'
1487 5' -52.5 NC_001335.1 + 716 0.73 0.457868
Target:  5'- cUGGACGAacaugccgaAGGCGGCgCAGCuauGGAACgucuACCg -3'
miRNA:   3'- -ACCUGCU---------UCCGUUG-GUCG---UCUUG----UGG- -5'
1487 5' -52.5 NC_001335.1 + 32676 0.73 0.457868
Target:  5'- gGcGGCGgcGGUGGCCAGCAGcagucucGCGCCc -3'
miRNA:   3'- aC-CUGCuuCCGUUGGUCGUCu------UGUGG- -5'
1487 5' -52.5 NC_001335.1 + 24546 0.73 0.457868
Target:  5'- -cGACGcAGGGCAACCGGCugucGAAguCCg -3'
miRNA:   3'- acCUGC-UUCCGUUGGUCGu---CUUguGG- -5'
1487 5' -52.5 NC_001335.1 + 9269 0.72 0.468123
Target:  5'- aGGACgcuGAGGGCAAgauCCAGCAGuucucuGCAgCCg -3'
miRNA:   3'- aCCUG---CUUCCGUU---GGUCGUCu-----UGU-GG- -5'
1487 5' -52.5 NC_001335.1 + 16268 0.72 0.478495
Target:  5'- cGGccACGAuGcCGACCAGCGGAGCugCu -3'
miRNA:   3'- aCC--UGCUuCcGUUGGUCGUCUUGugG- -5'
1487 5' -52.5 NC_001335.1 + 4086 0.72 0.488978
Target:  5'- -cGGCG-AGGCAGCCGGCGGcGAUGCa -3'
miRNA:   3'- acCUGCuUCCGUUGGUCGUC-UUGUGg -5'
1487 5' -52.5 NC_001335.1 + 48302 0.72 0.510258
Target:  5'- cGGcCGAAccacacccuuGGCGuggGCCAGCAGGACgugGCCg -3'
miRNA:   3'- aCCuGCUU----------CCGU---UGGUCGUCUUG---UGG- -5'
1487 5' -52.5 NC_001335.1 + 25159 0.72 0.521042
Target:  5'- cGGAaguggcucgUGGAGcGCGACCucGCAGAcgGCACCa -3'
miRNA:   3'- aCCU---------GCUUC-CGUUGGu-CGUCU--UGUGG- -5'
1487 5' -52.5 NC_001335.1 + 48778 0.72 0.521042
Target:  5'- cGGGCGGcgcaagccucgAGGUggUCgAGCAGGACGCg -3'
miRNA:   3'- aCCUGCU-----------UCCGuuGG-UCGUCUUGUGg -5'
1487 5' -52.5 NC_001335.1 + 28093 0.71 0.531915
Target:  5'- gGGACGuugucGGGGCGuUCGGCGGuguaGACGCCg -3'
miRNA:   3'- aCCUGC-----UUCCGUuGGUCGUC----UUGUGG- -5'
1487 5' -52.5 NC_001335.1 + 47857 0.71 0.553894
Target:  5'- gGGACG--GGCAucACC-GCAGcAACGCCg -3'
miRNA:   3'- aCCUGCuuCCGU--UGGuCGUC-UUGUGG- -5'
1487 5' -52.5 NC_001335.1 + 46259 0.71 0.564986
Target:  5'- cGGugGuucuAGGCAACCuGCcugGGAucauCGCCg -3'
miRNA:   3'- aCCugCu---UCCGUUGGuCG---UCUu---GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.