Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 1494 | 3' | -54.4 | NC_001335.1 | + | 25167 | 0.66 | 0.763444 |
|
Target: 5'- gGGuCCagguCUCCAUCUCGAUgagccgcuucucgCCCGcGAGCc -3' miRNA: 3'- gUCuGG----GAGGUAGAGCUA-------------GGGC-UUCG- -5' |
|||||||
| 1494 | 3' | -54.4 | NC_001335.1 | + | 7651 | 0.66 | 0.764469 |
|
Target: 5'- gCAGGCCCUCgCGgagcuUCUCGAugcccuUCUCGAAu- -3' miRNA: 3'- -GUCUGGGAG-GU-----AGAGCU------AGGGCUUcg -5' |
|||||||
| 1494 | 3' | -54.4 | NC_001335.1 | + | 19951 | 0.66 | 0.764469 |
|
Target: 5'- uCGGACCCaUCCA-CUCGuugauGUCCgUGggGUc -3' miRNA: 3'- -GUCUGGG-AGGUaGAGC-----UAGG-GCuuCG- -5' |
|||||||
| 1494 | 3' | -54.4 | NC_001335.1 | + | 14577 | 0.66 | 0.764469 |
|
Target: 5'- gGGAUCCUCgGUggUGAUCUcgCGGAGCu -3' miRNA: 3'- gUCUGGGAGgUAgaGCUAGG--GCUUCG- -5' |
|||||||
| 1494 | 3' | -54.4 | NC_001335.1 | + | 40124 | 0.66 | 0.768553 |
|
Target: 5'- cCGGGCUCUCCGggUCGAUCCgcuuguggguccagaCGGucGGCu -3' miRNA: 3'- -GUCUGGGAGGUagAGCUAGG---------------GCU--UCG- -5' |
|||||||
| 1494 | 3' | -54.4 | NC_001335.1 | + | 46852 | 0.66 | 0.774635 |
|
Target: 5'- -cGACCUgggCCAUCUCcagCCCGuacuuGGCc -3' miRNA: 3'- guCUGGGa--GGUAGAGcuaGGGCu----UCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home