miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1506 3' -55.2 NC_001335.1 + 40031 0.66 0.743824
Target:  5'- cGUCCACGAauGUCCCu--UCGggUacaagcaGGCg -3'
miRNA:   3'- -CAGGUGCU--UAGGGucuGGCuuGg------CCG- -5'
1506 3' -55.2 NC_001335.1 + 36230 0.66 0.7407
Target:  5'- uUCUA-GAccUCCCAGACUcggccgucgaccgaGAACCGGCc -3'
miRNA:   3'- cAGGUgCUu-AGGGUCUGG--------------CUUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 47873 0.66 0.7407
Target:  5'- uGUCCACGAcuucguggaccuuggCCCAGAacu-GCCGGUc -3'
miRNA:   3'- -CAGGUGCUua-------------GGGUCUggcuUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 13360 0.66 0.722819
Target:  5'- aUCCuCGGggcccaGUCCCAGAUCG-AgUGGCg -3'
miRNA:   3'- cAGGuGCU------UAGGGUCUGGCuUgGCCG- -5'
1506 3' -55.2 NC_001335.1 + 13182 0.66 0.722819
Target:  5'- cUCCgauggcaacaaGCGGA--CCAGGCCGucgaauACCGGCa -3'
miRNA:   3'- cAGG-----------UGCUUagGGUCUGGCu-----UGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 32871 0.66 0.722819
Target:  5'- -aCgGCGcGGUCUCAGGCUcaggagccgGGGCCGGCu -3'
miRNA:   3'- caGgUGC-UUAGGGUCUGG---------CUUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 11807 0.66 0.722819
Target:  5'- gGUCuCGCuGGUggaCCCGGACgGcACCGGCu -3'
miRNA:   3'- -CAG-GUGcUUA---GGGUCUGgCuUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 51656 0.66 0.712177
Target:  5'- gGUagGCGGAUCCgagaGGAUCGuGCCGGUg -3'
miRNA:   3'- -CAggUGCUUAGGg---UCUGGCuUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 32204 0.66 0.712177
Target:  5'- -gCUAcCGGucGUUCCAccGACCGAACCcGGCa -3'
miRNA:   3'- caGGU-GCU--UAGGGU--CUGGCUUGG-CCG- -5'
1506 3' -55.2 NC_001335.1 + 44615 0.66 0.701456
Target:  5'- uUCCGCGuGUCCCAcGGCCaGuucuGCUGGa -3'
miRNA:   3'- cAGGUGCuUAGGGU-CUGG-Cu---UGGCCg -5'
1506 3' -55.2 NC_001335.1 + 12692 0.66 0.701456
Target:  5'- cGUCgGCGAcGUUCCGGGCCGAuCUGa- -3'
miRNA:   3'- -CAGgUGCU-UAGGGUCUGGCUuGGCcg -5'
1506 3' -55.2 NC_001335.1 + 23135 0.66 0.701456
Target:  5'- -aCCuCGAAcuUCUCAGcACCGuuggccguGCCGGCg -3'
miRNA:   3'- caGGuGCUU--AGGGUC-UGGCu-------UGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 7985 0.67 0.690668
Target:  5'- uUCUGgGGAUCCCAGAUgucgaugaCGAACagcaGGCc -3'
miRNA:   3'- cAGGUgCUUAGGGUCUG--------GCUUGg---CCG- -5'
1506 3' -55.2 NC_001335.1 + 49539 0.67 0.690668
Target:  5'- uUCCGCGAGgcugCCC--ACCGAGCCa-- -3'
miRNA:   3'- cAGGUGCUUa---GGGucUGGCUUGGccg -5'
1506 3' -55.2 NC_001335.1 + 35318 0.67 0.690668
Target:  5'- cUCCGgGAAcaccucggCCCGGuacagcuCCGAACCGGg -3'
miRNA:   3'- cAGGUgCUUa-------GGGUCu------GGCUUGGCCg -5'
1506 3' -55.2 NC_001335.1 + 17801 0.67 0.690668
Target:  5'- cUCCAugccguugcCGAAUCCCucGGCggUGAACUGGCc -3'
miRNA:   3'- cAGGU---------GCUUAGGGu-CUG--GCUUGGCCG- -5'
1506 3' -55.2 NC_001335.1 + 22659 0.67 0.689586
Target:  5'- uUCCaACGGAUCCagcGGCCGAggguacuACCGuGCc -3'
miRNA:   3'- cAGG-UGCUUAGGgu-CUGGCU-------UGGC-CG- -5'
1506 3' -55.2 NC_001335.1 + 5860 0.67 0.668936
Target:  5'- aUCUGCGuggCCagCGGGCCGAGCUGGg -3'
miRNA:   3'- cAGGUGCuuaGG--GUCUGGCUUGGCCg -5'
1506 3' -55.2 NC_001335.1 + 45992 0.67 0.667845
Target:  5'- cUCCAcCGAGUUCaAGGCCGAGacgcgaaagacguUCGGCa -3'
miRNA:   3'- cAGGU-GCUUAGGgUCUGGCUU-------------GGCCG- -5'
1506 3' -55.2 NC_001335.1 + 34770 0.67 0.658013
Target:  5'- -cCCcCGAggCCCAcagauGCCGAccuGCCGGCa -3'
miRNA:   3'- caGGuGCUuaGGGUc----UGGCU---UGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.