miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1538 5' -62.1 NC_001347.2 + 183612 0.66 0.785827
Target:  5'- uUGCGCaGCGCGGcAgAGCCgaUGaGCCCu -3'
miRNA:   3'- gAUGCGcCGCGCU-UgUCGGg-GC-CGGG- -5'
1538 5' -62.1 NC_001347.2 + 166997 0.66 0.785827
Target:  5'- -gACGCGGCGaacccACGGCUUgaaacaGGCCCu -3'
miRNA:   3'- gaUGCGCCGCgcu--UGUCGGGg-----CCGGG- -5'
1538 5' -62.1 NC_001347.2 + 182290 0.66 0.785827
Target:  5'- -cAUGCGGCGUcguugccgGGGCGGCUgcuCCaGGUCCg -3'
miRNA:   3'- gaUGCGCCGCG--------CUUGUCGG---GG-CCGGG- -5'
1538 5' -62.1 NC_001347.2 + 227 0.66 0.785827
Target:  5'- ---gGCGGUGUGcGCGGCCUCGGg-- -3'
miRNA:   3'- gaugCGCCGCGCuUGUCGGGGCCggg -5'
1538 5' -62.1 NC_001347.2 + 12001 0.66 0.785827
Target:  5'- uUugGCaGCGCGGcugucaccgACGGgCCCGaaacGCCCu -3'
miRNA:   3'- gAugCGcCGCGCU---------UGUCgGGGC----CGGG- -5'
1538 5' -62.1 NC_001347.2 + 158029 0.66 0.785827
Target:  5'- -cACGCGGgCGcCGGACAGCa--GGCgCg -3'
miRNA:   3'- gaUGCGCC-GC-GCUUGUCGgggCCGgG- -5'
1538 5' -62.1 NC_001347.2 + 86012 0.66 0.785827
Target:  5'- --cCGCGGCGCccggcaGACAGCCgCUgacgaaGGCCUc -3'
miRNA:   3'- gauGCGCCGCGc-----UUGUCGG-GG------CCGGG- -5'
1538 5' -62.1 NC_001347.2 + 161579 0.66 0.785827
Target:  5'- -cGCGCGGCGCcgcCGGCUaCGcGUCCg -3'
miRNA:   3'- gaUGCGCCGCGcuuGUCGGgGC-CGGG- -5'
1538 5' -62.1 NC_001347.2 + 158097 0.66 0.785827
Target:  5'- -cGCGCuGCGCG-GCGGCCUcauCGGCa- -3'
miRNA:   3'- gaUGCGcCGCGCuUGUCGGG---GCCGgg -5'
1538 5' -62.1 NC_001347.2 + 229706 0.66 0.785827
Target:  5'- ---gGCGGUGUGcGCGGCCUCGGg-- -3'
miRNA:   3'- gaugCGCCGCGCuUGUCGGGGCCggg -5'
1538 5' -62.1 NC_001347.2 + 209410 0.66 0.785827
Target:  5'- aUGCGgggguucuCGGgGCGGACAGgCCaCGGUCa -3'
miRNA:   3'- gAUGC--------GCCgCGCUUGUCgGG-GCCGGg -5'
1538 5' -62.1 NC_001347.2 + 197734 0.66 0.783263
Target:  5'- -gACGCGaCGCcGACGGCCaggucauccgcgagUCGGCCUg -3'
miRNA:   3'- gaUGCGCcGCGcUUGUCGG--------------GGCCGGG- -5'
1538 5' -62.1 NC_001347.2 + 17018 0.66 0.77724
Target:  5'- uUugGCaGGCGCGcgUGGUCCgCGGCg- -3'
miRNA:   3'- gAugCG-CCGCGCuuGUCGGG-GCCGgg -5'
1538 5' -62.1 NC_001347.2 + 165202 0.66 0.77724
Target:  5'- -cGCGCGGCGaucuCAGCCuCUGGUa- -3'
miRNA:   3'- gaUGCGCCGCgcuuGUCGG-GGCCGgg -5'
1538 5' -62.1 NC_001347.2 + 1209 0.66 0.77724
Target:  5'- -cGCGCGGCGUuuuuggccAACAGCaCgGGCCg -3'
miRNA:   3'- gaUGCGCCGCGc-------UUGUCGgGgCCGGg -5'
1538 5' -62.1 NC_001347.2 + 7119 0.66 0.77724
Target:  5'- -gGCGUucuuucccaacGGCGUGGACGGUCuCCGGUg- -3'
miRNA:   3'- gaUGCG-----------CCGCGCUUGUCGG-GGCCGgg -5'
1538 5' -62.1 NC_001347.2 + 67018 0.66 0.77724
Target:  5'- -aACGcCGGCuGCGGagACAGCUgCGGCg- -3'
miRNA:   3'- gaUGC-GCCG-CGCU--UGUCGGgGCCGgg -5'
1538 5' -62.1 NC_001347.2 + 198079 0.66 0.77724
Target:  5'- gCUGuCGCGGCggucGCGAcggugACGGUCCC-GCUCg -3'
miRNA:   3'- -GAU-GCGCCG----CGCU-----UGUCGGGGcCGGG- -5'
1538 5' -62.1 NC_001347.2 + 150568 0.66 0.768541
Target:  5'- -aGCGuCGGCGUuuuCAGCgUCGGCuCCg -3'
miRNA:   3'- gaUGC-GCCGCGcuuGUCGgGGCCG-GG- -5'
1538 5' -62.1 NC_001347.2 + 110518 0.66 0.768541
Target:  5'- ---aGCGGCGCG-GCGGCgaagaaaaUCGGCCg -3'
miRNA:   3'- gaugCGCCGCGCuUGUCGg-------GGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.