miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1540 3' -60.2 NC_001347.2 + 210145 0.66 0.835686
Target:  5'- cGCCGUcuuucgUGCCGUCGCCGCac-UGCg- -3'
miRNA:   3'- cCGGUA------ACGGCGGCGGCGgguAUGgu -5'
1540 3' -60.2 NC_001347.2 + 20442 0.66 0.835686
Target:  5'- cGGCUuugUGCCGagaCCGUCGCCacCAUGCa- -3'
miRNA:   3'- -CCGGua-ACGGC---GGCGGCGG--GUAUGgu -5'
1540 3' -60.2 NC_001347.2 + 54898 0.66 0.835686
Target:  5'- uGGCCAUUGCauaCGuuGUauCCAUAUCAu -3'
miRNA:   3'- -CCGGUAACGgcgGCggCG--GGUAUGGU- -5'
1540 3' -60.2 NC_001347.2 + 171518 0.66 0.835686
Target:  5'- uGGCCGacagcgugUGCCuGCCGCCGugcuugaguCCCgauauggcgucGUGCCAc -3'
miRNA:   3'- -CCGGUa-------ACGG-CGGCGGC---------GGG-----------UAUGGU- -5'
1540 3' -60.2 NC_001347.2 + 12332 0.66 0.833325
Target:  5'- aGGCCAUcuacggcgagcaaaUGCgcaCGCCGCUGCUa--ACCAc -3'
miRNA:   3'- -CCGGUA--------------ACG---GCGGCGGCGGguaUGGU- -5'
1540 3' -60.2 NC_001347.2 + 135149 0.66 0.82776
Target:  5'- cGGCCAcacccaaccUCGCCGCCGCaucgGCCAg -3'
miRNA:   3'- -CCGGUaac------GGCGGCGGCGgguaUGGU- -5'
1540 3' -60.2 NC_001347.2 + 64750 0.66 0.82776
Target:  5'- uGCCGcagacUUGaugUGCCGCCGCCCGgaUugCGg -3'
miRNA:   3'- cCGGU-----AACg--GCGGCGGCGGGU--AugGU- -5'
1540 3' -60.2 NC_001347.2 + 38399 0.66 0.82776
Target:  5'- cGGCCuccgucuccgUGCCGCuCGCCGCUgGcgGCg- -3'
miRNA:   3'- -CCGGua--------ACGGCG-GCGGCGGgUa-UGgu -5'
1540 3' -60.2 NC_001347.2 + 86210 0.66 0.819674
Target:  5'- cGCCG-UGCCgGUCGUCGCaCCGcucgGCCAc -3'
miRNA:   3'- cCGGUaACGG-CGGCGGCG-GGUa---UGGU- -5'
1540 3' -60.2 NC_001347.2 + 43978 0.66 0.819674
Target:  5'- aGCCGaccgGCCGCCGaCCcguucCCCAggACCAg -3'
miRNA:   3'- cCGGUaa--CGGCGGC-GGc----GGGUa-UGGU- -5'
1540 3' -60.2 NC_001347.2 + 118190 0.66 0.819674
Target:  5'- cGCCA--GCCcCCGCCGCgCAUugucACCGc -3'
miRNA:   3'- cCGGUaaCGGcGGCGGCGgGUA----UGGU- -5'
1540 3' -60.2 NC_001347.2 + 199615 0.66 0.819674
Target:  5'- cGCCAccGCCGCCGgCGCCguUcUCGg -3'
miRNA:   3'- cCGGUaaCGGCGGCgGCGGguAuGGU- -5'
1540 3' -60.2 NC_001347.2 + 83857 0.66 0.811433
Target:  5'- gGGCCAUguuuacgacgUGUCG-CGCCGUCCGcUACUu -3'
miRNA:   3'- -CCGGUA----------ACGGCgGCGGCGGGU-AUGGu -5'
1540 3' -60.2 NC_001347.2 + 18460 0.66 0.811433
Target:  5'- gGGCC--UGCgCGCCuGCCGgCCuuuugACCAc -3'
miRNA:   3'- -CCGGuaACG-GCGG-CGGCgGGua---UGGU- -5'
1540 3' -60.2 NC_001347.2 + 92381 0.66 0.810601
Target:  5'- -aCCAggcGCCGgCGCCGCCUAgcgucacUGCCu -3'
miRNA:   3'- ccGGUaa-CGGCgGCGGCGGGU-------AUGGu -5'
1540 3' -60.2 NC_001347.2 + 5877 0.66 0.803046
Target:  5'- cGCCAgucGCCGCaGUCGCaCCAcagGCCGu -3'
miRNA:   3'- cCGGUaa-CGGCGgCGGCG-GGUa--UGGU- -5'
1540 3' -60.2 NC_001347.2 + 108154 0.66 0.803046
Target:  5'- aGGCgGcgGCCGCagagggcgCGCCGCUCAgucGCCu -3'
miRNA:   3'- -CCGgUaaCGGCG--------GCGGCGGGUa--UGGu -5'
1540 3' -60.2 NC_001347.2 + 193709 0.66 0.8022
Target:  5'- uGGCUuuccgcgaGUUGCUGgccugcgaggacaCCGCCGCUCGUugCGc -3'
miRNA:   3'- -CCGG--------UAACGGC-------------GGCGGCGGGUAugGU- -5'
1540 3' -60.2 NC_001347.2 + 76974 0.66 0.794519
Target:  5'- aGUC-UUGCCGgCGCC-CgCCGUGCCGg -3'
miRNA:   3'- cCGGuAACGGCgGCGGcG-GGUAUGGU- -5'
1540 3' -60.2 NC_001347.2 + 63175 0.66 0.794519
Target:  5'- cGCCAcgGUCaccaCGCCGCCCAugaucgaccuUACCAg -3'
miRNA:   3'- cCGGUaaCGGcg--GCGGCGGGU----------AUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.