miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1540 5' -51.3 NC_001347.2 + 1678 0.66 0.998506
Target:  5'- uCCGACAGA-CGUuGCUGcg--CGCCg -3'
miRNA:   3'- cGGCUGUUUaGCGuCGACagaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 91406 0.66 0.998506
Target:  5'- uGCUGGCcAAUCGCGuGCUGcaguaccucaUCcaCGCCu -3'
miRNA:   3'- -CGGCUGuUUAGCGU-CGAC----------AGaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 83169 0.66 0.998506
Target:  5'- cGCCGuguuCA---UGCAGCUcGUCUUUuuaGCCg -3'
miRNA:   3'- -CGGCu---GUuuaGCGUCGA-CAGAAG---CGG- -5'
1540 5' -51.3 NC_001347.2 + 54486 0.66 0.998478
Target:  5'- cGCCGACuaaauucauGUCGCGcgauaguGgUGUUUaUCGCCg -3'
miRNA:   3'- -CGGCUGuu-------UAGCGU-------CgACAGA-AGCGG- -5'
1540 5' -51.3 NC_001347.2 + 152128 0.66 0.998336
Target:  5'- cGCCGACAAGUacuuugaGCagguucucaaGGCUGUaacuaacgugcugUCGCCc -3'
miRNA:   3'- -CGGCUGUUUAg------CG----------UCGACAga-----------AGCGG- -5'
1540 5' -51.3 NC_001347.2 + 168262 0.66 0.998213
Target:  5'- cCCGGCGGAccaGCGGCUG-CUg-GCCc -3'
miRNA:   3'- cGGCUGUUUag-CGUCGACaGAagCGG- -5'
1540 5' -51.3 NC_001347.2 + 142551 0.66 0.998213
Target:  5'- cGCCGGCGAAgaCGaGGCUGgCggCGUCg -3'
miRNA:   3'- -CGGCUGUUUa-GCgUCGACaGaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 30742 0.66 0.998213
Target:  5'- -gCGACGAGUCGUcuGC-GUCcUCGUCg -3'
miRNA:   3'- cgGCUGUUUAGCGu-CGaCAGaAGCGG- -5'
1540 5' -51.3 NC_001347.2 + 153281 0.66 0.997874
Target:  5'- gGCCGACGuagCGCcGUUcaccGUCgaCGCCa -3'
miRNA:   3'- -CGGCUGUuuaGCGuCGA----CAGaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 16946 0.66 0.997874
Target:  5'- cGCUGGCucuGUCGaGGCgacGUUUUCGCg -3'
miRNA:   3'- -CGGCUGuu-UAGCgUCGa--CAGAAGCGg -5'
1540 5' -51.3 NC_001347.2 + 156678 0.66 0.997874
Target:  5'- uGgCGGCGGGUCGUggcGGCUGUg-UCGUUg -3'
miRNA:   3'- -CgGCUGUUUAGCG---UCGACAgaAGCGG- -5'
1540 5' -51.3 NC_001347.2 + 166065 0.66 0.997874
Target:  5'- uGCgGA---GUCGCGGCgGUUggggCGCCg -3'
miRNA:   3'- -CGgCUguuUAGCGUCGaCAGaa--GCGG- -5'
1540 5' -51.3 NC_001347.2 + 226763 0.66 0.997606
Target:  5'- cGUCGGCAugccgcuGAUCGCAGUggccccaccucggcaUGcCggCGCCg -3'
miRNA:   3'- -CGGCUGU-------UUAGCGUCG---------------ACaGaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 40669 0.66 0.997483
Target:  5'- gGCCGGgGAcggggGUUGCgcuggggccggGGCUGUUcgCGCCg -3'
miRNA:   3'- -CGGCUgUU-----UAGCG-----------UCGACAGaaGCGG- -5'
1540 5' -51.3 NC_001347.2 + 194468 0.66 0.997483
Target:  5'- cGCCacGGCGGGUCGUuggcucccGCUGUgCUggcCGCCg -3'
miRNA:   3'- -CGG--CUGUUUAGCGu-------CGACA-GAa--GCGG- -5'
1540 5' -51.3 NC_001347.2 + 193081 0.66 0.997483
Target:  5'- uGCCGGCAuguccggccGUCGCaagGGCUGcUCggCgGCCa -3'
miRNA:   3'- -CGGCUGUu--------UAGCG---UCGAC-AGaaG-CGG- -5'
1540 5' -51.3 NC_001347.2 + 150636 0.66 0.997034
Target:  5'- cGCCGGCGGuacUGCGGCgGUUUcguaccagggCGCCa -3'
miRNA:   3'- -CGGCUGUUua-GCGUCGaCAGAa---------GCGG- -5'
1540 5' -51.3 NC_001347.2 + 38754 0.66 0.997034
Target:  5'- cGCCGGCuGAggcaGCAGC-GUCgcgCGCg -3'
miRNA:   3'- -CGGCUGuUUag--CGUCGaCAGaa-GCGg -5'
1540 5' -51.3 NC_001347.2 + 66517 0.67 0.99652
Target:  5'- aGgCGGCGgcGAUCGCAGCc-UCcUCGCUg -3'
miRNA:   3'- -CgGCUGU--UUAGCGUCGacAGaAGCGG- -5'
1540 5' -51.3 NC_001347.2 + 182862 0.67 0.99652
Target:  5'- cGCCGugGGAUCgGCuucgagaucgAGCUGggcCUcgcgcggcUCGCCg -3'
miRNA:   3'- -CGGCugUUUAG-CG----------UCGACa--GA--------AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.