miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1543 3' -56.4 NC_001347.2 + 37999 0.66 0.945476
Target:  5'- -uCGGGCAgCAgccgccgcgcggccuCGGCGGCGGGCGc -3'
miRNA:   3'- uuGCUCGUgGUagu------------GCCGCCGCUUGU- -5'
1543 3' -56.4 NC_001347.2 + 38160 0.66 0.944169
Target:  5'- cAGC-AGCACCAccagCAUGGCGcGCGGcACGg -3'
miRNA:   3'- -UUGcUCGUGGUa---GUGCCGC-CGCU-UGU- -5'
1543 3' -56.4 NC_001347.2 + 193891 0.66 0.944169
Target:  5'- cGCGAGC-CCGUCAUGccGCugGGCGAAa- -3'
miRNA:   3'- uUGCUCGuGGUAGUGC--CG--CCGCUUgu -5'
1543 3' -56.4 NC_001347.2 + 140898 0.66 0.944169
Target:  5'- --aGAGCAgCcgCGacgaGGUGGCGGGCGc -3'
miRNA:   3'- uugCUCGUgGuaGUg---CCGCCGCUUGU- -5'
1543 3' -56.4 NC_001347.2 + 182212 0.66 0.943728
Target:  5'- uGGCGGGCugCGUCGCcuucggugacgucGGUGGUGGc-- -3'
miRNA:   3'- -UUGCUCGugGUAGUG-------------CCGCCGCUugu -5'
1543 3' -56.4 NC_001347.2 + 1724 0.66 0.939664
Target:  5'- --gGAGCugCG-C-CGGCGGUGGGCc -3'
miRNA:   3'- uugCUCGugGUaGuGCCGCCGCUUGu -5'
1543 3' -56.4 NC_001347.2 + 37916 0.66 0.939664
Target:  5'- uGCGgcucGGCGCCcacagCGCGGCGcGCGggUg -3'
miRNA:   3'- uUGC----UCGUGGua---GUGCCGC-CGCuuGu -5'
1543 3' -56.4 NC_001347.2 + 185132 0.66 0.939664
Target:  5'- cGCGAGCAgCCGcCG-GGCGGCacGGGCAa -3'
miRNA:   3'- uUGCUCGU-GGUaGUgCCGCCG--CUUGU- -5'
1543 3' -56.4 NC_001347.2 + 153237 0.66 0.939664
Target:  5'- cGCGGGCGCgCGUCggccggcgACGGCGGUucGCc -3'
miRNA:   3'- uUGCUCGUG-GUAG--------UGCCGCCGcuUGu -5'
1543 3' -56.4 NC_001347.2 + 66503 0.66 0.939664
Target:  5'- aAACGccGCgAUCGagGCGGCGGCGAucGCAg -3'
miRNA:   3'- -UUGCu-CG-UGGUagUGCCGCCGCU--UGU- -5'
1543 3' -56.4 NC_001347.2 + 156651 0.66 0.939201
Target:  5'- -cCGGGCcucggccgccgccGCCAccCAUGGCGGCGggUc -3'
miRNA:   3'- uuGCUCG-------------UGGUa-GUGCCGCCGCuuGu -5'
1543 3' -56.4 NC_001347.2 + 154694 0.66 0.92997
Target:  5'- -cUGAGCGCCG-CACGG-GGCGcgUAa -3'
miRNA:   3'- uuGCUCGUGGUaGUGCCgCCGCuuGU- -5'
1543 3' -56.4 NC_001347.2 + 89548 0.66 0.92997
Target:  5'- aGGCGGGCACC-UCGCGccccgagaaGCGGCcGcGCAc -3'
miRNA:   3'- -UUGCUCGUGGuAGUGC---------CGCCG-CuUGU- -5'
1543 3' -56.4 NC_001347.2 + 79062 0.66 0.92997
Target:  5'- cGCGucGGCGCCAaaugagcCGCGaaGCGGCGGGCGg -3'
miRNA:   3'- uUGC--UCGUGGUa------GUGC--CGCCGCUUGU- -5'
1543 3' -56.4 NC_001347.2 + 152167 0.66 0.924779
Target:  5'- uAACGuGCugucgcCCGUCuuuccCGGCGGCGAAa- -3'
miRNA:   3'- -UUGCuCGu-----GGUAGu----GCCGCCGCUUgu -5'
1543 3' -56.4 NC_001347.2 + 228600 0.66 0.924779
Target:  5'- cAGCGAG-GCCGUCGCGuuGGCGcgccAACAg -3'
miRNA:   3'- -UUGCUCgUGGUAGUGCcgCCGC----UUGU- -5'
1543 3' -56.4 NC_001347.2 + 34333 0.66 0.924779
Target:  5'- cGAUGAGaa-CGUCAgCGGUGGCGAAa- -3'
miRNA:   3'- -UUGCUCgugGUAGU-GCCGCCGCUUgu -5'
1543 3' -56.4 NC_001347.2 + 8837 0.66 0.924779
Target:  5'- cGACGAaaccCACCGUCACGGUc-CGAGCAc -3'
miRNA:   3'- -UUGCUc---GUGGUAGUGCCGccGCUUGU- -5'
1543 3' -56.4 NC_001347.2 + 68747 0.66 0.924779
Target:  5'- gAGCGAGUGCCGcCGCaGCcGGCaGAGCGc -3'
miRNA:   3'- -UUGCUCGUGGUaGUGcCG-CCG-CUUGU- -5'
1543 3' -56.4 NC_001347.2 + 988 0.66 0.924779
Target:  5'- --gGAGCGCCGUCACaGCGG---GCAc -3'
miRNA:   3'- uugCUCGUGGUAGUGcCGCCgcuUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.