miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1544 5' -58.1 NC_001347.2 + 14283 0.66 0.917024
Target:  5'- gCGCUGCaGUUAUG-CCGcCGgaGCUCc -3'
miRNA:   3'- -GCGGCG-CAGUACuGGCuGCgaCGAGa -5'
1544 5' -58.1 NC_001347.2 + 148622 0.66 0.917024
Target:  5'- gGUCGCGg-GUGGCCGGCGUcagcGUUCg -3'
miRNA:   3'- gCGGCGCagUACUGGCUGCGa---CGAGa -5'
1544 5' -58.1 NC_001347.2 + 141376 0.66 0.917024
Target:  5'- -uCCGCGUCGUaauCCGGCuaaggGCUGCUUg -3'
miRNA:   3'- gcGGCGCAGUAcu-GGCUG-----CGACGAGa -5'
1544 5' -58.1 NC_001347.2 + 86755 0.66 0.917024
Target:  5'- cCGUCGC-UCGUGGCCaacaGACGCUccacGUUCUu -3'
miRNA:   3'- -GCGGCGcAGUACUGG----CUGCGA----CGAGA- -5'
1544 5' -58.1 NC_001347.2 + 194490 0.66 0.911414
Target:  5'- cCGCUGUG-C-UGGCCGcCGCUGCa-- -3'
miRNA:   3'- -GCGGCGCaGuACUGGCuGCGACGaga -5'
1544 5' -58.1 NC_001347.2 + 126676 0.66 0.911414
Target:  5'- cCGgCGCGUgGUGGCuuaCGACGCUGacgCg -3'
miRNA:   3'- -GCgGCGCAgUACUG---GCUGCGACga-Ga -5'
1544 5' -58.1 NC_001347.2 + 40682 0.66 0.911414
Target:  5'- gGuuGCG-CuggGGCCGGgGCUGUUCg -3'
miRNA:   3'- gCggCGCaGua-CUGGCUgCGACGAGa -5'
1544 5' -58.1 NC_001347.2 + 111102 0.66 0.911414
Target:  5'- -uCCGCGUCAcgcUGACCGGCGaucaggccGUUCa -3'
miRNA:   3'- gcGGCGCAGU---ACUGGCUGCga------CGAGa -5'
1544 5' -58.1 NC_001347.2 + 26133 0.66 0.911414
Target:  5'- aGCCGCGUCcgcggaaacGACgGACGCUaCUUUc -3'
miRNA:   3'- gCGGCGCAGua-------CUGgCUGCGAcGAGA- -5'
1544 5' -58.1 NC_001347.2 + 130100 0.66 0.905587
Target:  5'- -aCCGCGcCAUGGCCuAUGUgUGCUCUu -3'
miRNA:   3'- gcGGCGCaGUACUGGcUGCG-ACGAGA- -5'
1544 5' -58.1 NC_001347.2 + 199234 0.66 0.905587
Target:  5'- -aCCGCGUgCGUGAuuauCCGACGCgugagaucgcGCUCg -3'
miRNA:   3'- gcGGCGCA-GUACU----GGCUGCGa---------CGAGa -5'
1544 5' -58.1 NC_001347.2 + 115037 0.66 0.899545
Target:  5'- cCGUCGCGUCc-GACgCGACGgUGUUUUc -3'
miRNA:   3'- -GCGGCGCAGuaCUG-GCUGCgACGAGA- -5'
1544 5' -58.1 NC_001347.2 + 40564 0.66 0.899545
Target:  5'- uGCCuGUGUCGUu-UCGGCGCUGCg-- -3'
miRNA:   3'- gCGG-CGCAGUAcuGGCUGCGACGaga -5'
1544 5' -58.1 NC_001347.2 + 82221 0.66 0.899545
Target:  5'- -uCCGCGguaugCGUGACCacACGCgGCUCg -3'
miRNA:   3'- gcGGCGCa----GUACUGGc-UGCGaCGAGa -5'
1544 5' -58.1 NC_001347.2 + 158994 0.66 0.899545
Target:  5'- aGCCGUGUCGcGcacCCGGCGCUGaCa-- -3'
miRNA:   3'- gCGGCGCAGUaCu--GGCUGCGAC-Gaga -5'
1544 5' -58.1 NC_001347.2 + 222426 0.66 0.898311
Target:  5'- uCGCCGCGUCucguucgucgaGGCCGAuCGaCUGC-Cg -3'
miRNA:   3'- -GCGGCGCAGua---------CUGGCU-GC-GACGaGa -5'
1544 5' -58.1 NC_001347.2 + 192650 0.66 0.893291
Target:  5'- aCGCUGCGUCGguuucUGcgcGgCGACaGCUGCUUUg -3'
miRNA:   3'- -GCGGCGCAGU-----AC---UgGCUG-CGACGAGA- -5'
1544 5' -58.1 NC_001347.2 + 16377 0.66 0.886827
Target:  5'- uGCUGCGUCAcggucaUGacGCCGACGCguugGC-Cg -3'
miRNA:   3'- gCGGCGCAGU------AC--UGGCUGCGa---CGaGa -5'
1544 5' -58.1 NC_001347.2 + 1902 0.67 0.873285
Target:  5'- uGCUGCGgc-UGGCUGGCGCUGggCg -3'
miRNA:   3'- gCGGCGCaguACUGGCUGCGACgaGa -5'
1544 5' -58.1 NC_001347.2 + 53673 0.67 0.873285
Target:  5'- cCG-CGCGUCAUGAgucccaaagacCUGACGCcGUUCUu -3'
miRNA:   3'- -GCgGCGCAGUACU-----------GGCUGCGaCGAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.