miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1551 5' -58.4 NC_001347.2 + 199684 0.66 0.906595
Target:  5'- -uGCCGGCCUugggugUCGcCGGCgAGCCCCgagGCg -3'
miRNA:   3'- gcUGGCUGGA------GGC-GUCG-UUGGGGa--UG- -5'
1551 5' -58.4 NC_001347.2 + 160705 0.66 0.906595
Target:  5'- gCGAUCGGCggCCGU--CAGCUCCUGCu -3'
miRNA:   3'- -GCUGGCUGgaGGCGucGUUGGGGAUG- -5'
1551 5' -58.4 NC_001347.2 + 24856 0.66 0.900594
Target:  5'- -cAUCGuCUUCaCGCGGCccuggacuuGGCCCCUGCg -3'
miRNA:   3'- gcUGGCuGGAG-GCGUCG---------UUGGGGAUG- -5'
1551 5' -58.4 NC_001347.2 + 198832 0.66 0.89438
Target:  5'- uCGACCGAaagcagCCGgAGCAuGCCCCg-- -3'
miRNA:   3'- -GCUGGCUgga---GGCgUCGU-UGGGGaug -5'
1551 5' -58.4 NC_001347.2 + 208039 0.66 0.887957
Target:  5'- gGACCGACgUCggaguCGCGGCGuucguuggcGCCgCUGCc -3'
miRNA:   3'- gCUGGCUGgAG-----GCGUCGU---------UGGgGAUG- -5'
1551 5' -58.4 NC_001347.2 + 196139 0.66 0.887957
Target:  5'- uCGGCCGcuGCCUgC-CGGCGGCCCUgUGCc -3'
miRNA:   3'- -GCUGGC--UGGAgGcGUCGUUGGGG-AUG- -5'
1551 5' -58.4 NC_001347.2 + 68739 0.66 0.887303
Target:  5'- aGGCCGuggagcgaguGCCgCCGCAGCcggcagagcgccgAACCCCgucGCa -3'
miRNA:   3'- gCUGGC----------UGGaGGCGUCG-------------UUGGGGa--UG- -5'
1551 5' -58.4 NC_001347.2 + 174243 0.66 0.884003
Target:  5'- uCGGaCGACCUCCGCGucggucgccgccuccGCGGCCCg--- -3'
miRNA:   3'- -GCUgGCUGGAGGCGU---------------CGUUGGGgaug -5'
1551 5' -58.4 NC_001347.2 + 217025 0.66 0.881327
Target:  5'- uGGCCGAagaCUCgGUcGCGAUCCUUAUa -3'
miRNA:   3'- gCUGGCUg--GAGgCGuCGUUGGGGAUG- -5'
1551 5' -58.4 NC_001347.2 + 39169 0.66 0.874494
Target:  5'- gCGACC-ACUUgCGCAuggcGCGGCCCgUGCu -3'
miRNA:   3'- -GCUGGcUGGAgGCGU----CGUUGGGgAUG- -5'
1551 5' -58.4 NC_001347.2 + 183477 0.66 0.874494
Target:  5'- --cUCGGCCUCgggagaCGCGcGCAGCCCCaGCg -3'
miRNA:   3'- gcuGGCUGGAG------GCGU-CGUUGGGGaUG- -5'
1551 5' -58.4 NC_001347.2 + 108306 0.67 0.867463
Target:  5'- -cGCCgGugCUgCCGCAcgagacGCGACUCCUGCa -3'
miRNA:   3'- gcUGG-CugGA-GGCGU------CGUUGGGGAUG- -5'
1551 5' -58.4 NC_001347.2 + 38460 0.67 0.860238
Target:  5'- -cGCCGGCCccgCCGC-GCAGCCCa--- -3'
miRNA:   3'- gcUGGCUGGa--GGCGuCGUUGGGgaug -5'
1551 5' -58.4 NC_001347.2 + 39130 0.67 0.860238
Target:  5'- aCGGCCGuCCgagCgGCAGCAGCgugCCCg-- -3'
miRNA:   3'- -GCUGGCuGGa--GgCGUCGUUG---GGGaug -5'
1551 5' -58.4 NC_001347.2 + 95351 0.67 0.852825
Target:  5'- uCGACaaaGAuaaaaacauCCUCCGUAguggcgugcGCGACCCCUAg -3'
miRNA:   3'- -GCUGg--CU---------GGAGGCGU---------CGUUGGGGAUg -5'
1551 5' -58.4 NC_001347.2 + 104617 0.67 0.844459
Target:  5'- gGACgcacaGACUUUCGCGGCcacacacAACCCCUGg -3'
miRNA:   3'- gCUGg----CUGGAGGCGUCG-------UUGGGGAUg -5'
1551 5' -58.4 NC_001347.2 + 202346 0.68 0.821402
Target:  5'- aGGUCGcGCCgCCGCAGCAucccgcauaGCCUCUACa -3'
miRNA:   3'- gCUGGC-UGGaGGCGUCGU---------UGGGGAUG- -5'
1551 5' -58.4 NC_001347.2 + 77449 0.68 0.813136
Target:  5'- cCGugCGugCUgCGCaAGCAGCugCUCUACg -3'
miRNA:   3'- -GCugGCugGAgGCG-UCGUUG--GGGAUG- -5'
1551 5' -58.4 NC_001347.2 + 193236 0.68 0.80387
Target:  5'- uGGCCGACCUgUGCGugcgacGCGACUaugagggCCUGCg -3'
miRNA:   3'- gCUGGCUGGAgGCGU------CGUUGG-------GGAUG- -5'
1551 5' -58.4 NC_001347.2 + 65889 0.68 0.79616
Target:  5'- gGGCCGACCgCCGCcGCccUCCCUcaACa -3'
miRNA:   3'- gCUGGCUGGaGGCGuCGuuGGGGA--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.