miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1554 3' -55.2 NC_001347.2 + 2222 0.66 0.97716
Target:  5'- --cCGGCGgCGUCGGggaccgugccGCgCGCCAugCu -3'
miRNA:   3'- guaGCCGUgGUAGCC----------UGaGCGGUugG- -5'
1554 3' -55.2 NC_001347.2 + 41279 0.66 0.97716
Target:  5'- uGUUGGCgcGCCAacgcgaCGGcCUCGCUGACUg -3'
miRNA:   3'- gUAGCCG--UGGUa-----GCCuGAGCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 17036 0.66 0.97716
Target:  5'- uCcgCGGCgACUucgCGGAacgUCGUCGACCg -3'
miRNA:   3'- -GuaGCCG-UGGua-GCCUg--AGCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 135610 0.66 0.97716
Target:  5'- uCGUCGGCcgACCGcCGcGACcC-CCAGCCg -3'
miRNA:   3'- -GUAGCCG--UGGUaGC-CUGaGcGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 28104 0.66 0.976925
Target:  5'- --aCGGCACUGUCGuguuccaGACcagCGCCAccauaGCCa -3'
miRNA:   3'- guaGCCGUGGUAGC-------CUGa--GCGGU-----UGG- -5'
1554 3' -55.2 NC_001347.2 + 82879 0.66 0.975728
Target:  5'- uCAUCGGCGcgcccCCAUcgccucccgagcgagCGGGC-CGCCGcuaucGCCa -3'
miRNA:   3'- -GUAGCCGU-----GGUA---------------GCCUGaGCGGU-----UGG- -5'
1554 3' -55.2 NC_001347.2 + 188988 0.66 0.974738
Target:  5'- --aCGGCGCCGUUgcccggGGAUaugaacccCGCCAACUg -3'
miRNA:   3'- guaGCCGUGGUAG------CCUGa-------GCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 78262 0.66 0.974738
Target:  5'- gCAUCGGCAUCga-GGACagCGUCGAguCCu -3'
miRNA:   3'- -GUAGCCGUGGuagCCUGa-GCGGUU--GG- -5'
1554 3' -55.2 NC_001347.2 + 61962 0.66 0.974738
Target:  5'- cCAUCuaCGCCGUguacgGGACUCGCCugaacGCCa -3'
miRNA:   3'- -GUAGccGUGGUAg----CCUGAGCGGu----UGG- -5'
1554 3' -55.2 NC_001347.2 + 65177 0.66 0.972134
Target:  5'- --gCGGCuacaGCgAgugCGGcgaugGCUCGCCGGCCg -3'
miRNA:   3'- guaGCCG----UGgUa--GCC-----UGAGCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 17124 0.66 0.972134
Target:  5'- gGUCGucCGCCGUCGGccGC-CGCCcauGCCa -3'
miRNA:   3'- gUAGCc-GUGGUAGCC--UGaGCGGu--UGG- -5'
1554 3' -55.2 NC_001347.2 + 40505 0.66 0.972134
Target:  5'- uGUCGGCACCGggcuUCGGgACgguguuucggCGCgCuGCCg -3'
miRNA:   3'- gUAGCCGUGGU----AGCC-UGa---------GCG-GuUGG- -5'
1554 3' -55.2 NC_001347.2 + 117802 0.66 0.972134
Target:  5'- ---gGGCaacgGCCGcUCGGcgcACUgCGCCAGCCa -3'
miRNA:   3'- guagCCG----UGGU-AGCC---UGA-GCGGUUGG- -5'
1554 3' -55.2 NC_001347.2 + 134401 0.66 0.972134
Target:  5'- --aUGGCGCCGcUCGGccagACUCGUCGAg- -3'
miRNA:   3'- guaGCCGUGGU-AGCC----UGAGCGGUUgg -5'
1554 3' -55.2 NC_001347.2 + 200213 0.66 0.969342
Target:  5'- --aCGG-GCCccCGGGCUCGCCcACUg -3'
miRNA:   3'- guaGCCgUGGuaGCCUGAGCGGuUGG- -5'
1554 3' -55.2 NC_001347.2 + 37613 0.66 0.969342
Target:  5'- ---gGGCGCCA--GGACUCGUCAucguAUCg -3'
miRNA:   3'- guagCCGUGGUagCCUGAGCGGU----UGG- -5'
1554 3' -55.2 NC_001347.2 + 193434 0.66 0.966356
Target:  5'- uCAUUGGCACgGUCucGCaCGCCAccuGCCg -3'
miRNA:   3'- -GUAGCCGUGgUAGccUGaGCGGU---UGG- -5'
1554 3' -55.2 NC_001347.2 + 198411 0.66 0.966356
Target:  5'- gAUCGcGCACCAUaa-ACUCGCCuACg -3'
miRNA:   3'- gUAGC-CGUGGUAgccUGAGCGGuUGg -5'
1554 3' -55.2 NC_001347.2 + 222127 0.66 0.966047
Target:  5'- --aCGGCgGCUAUUGGAUUCGgCAuuggugcGCCg -3'
miRNA:   3'- guaGCCG-UGGUAGCCUGAGCgGU-------UGG- -5'
1554 3' -55.2 NC_001347.2 + 128994 0.67 0.963171
Target:  5'- cCGUCGGCGCCGccUCGcaucaUCaCCGACCc -3'
miRNA:   3'- -GUAGCCGUGGU--AGCcug--AGcGGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.