miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1555 3' -52.9 NC_001347.2 + 94863 0.66 0.995079
Target:  5'- aUGUugACGUCGUccagugCGGCCUCcuCGAuGGg -3'
miRNA:   3'- -ACA--UGCGGCAaaa---GCCGGAGu-GCU-CC- -5'
1555 3' -52.9 NC_001347.2 + 100193 0.66 0.995079
Target:  5'- --gGCGCCG----CGGCCUCGCccAGGu -3'
miRNA:   3'- acaUGCGGCaaaaGCCGGAGUGc-UCC- -5'
1555 3' -52.9 NC_001347.2 + 199779 0.66 0.994321
Target:  5'- uUGgcgGCGCCGgugccgcCGGUCUCGCGcacgagcucgaAGGa -3'
miRNA:   3'- -ACa--UGCGGCaaaa---GCCGGAGUGC-----------UCC- -5'
1555 3' -52.9 NC_001347.2 + 191462 0.66 0.993471
Target:  5'- cGUACGCCGccUUgGGCgUCACcacguuGGa -3'
miRNA:   3'- aCAUGCGGCaaAAgCCGgAGUGcu----CC- -5'
1555 3' -52.9 NC_001347.2 + 138701 0.66 0.993471
Target:  5'- gGUGCGUCGgcuagCGGUCUggUGCGAGa -3'
miRNA:   3'- aCAUGCGGCaaaa-GCCGGA--GUGCUCc -5'
1555 3' -52.9 NC_001347.2 + 63229 0.66 0.992522
Target:  5'- --gACGCUGUUUacgcCGGCCUC-CGcGGc -3'
miRNA:   3'- acaUGCGGCAAAa---GCCGGAGuGCuCC- -5'
1555 3' -52.9 NC_001347.2 + 195895 0.66 0.991467
Target:  5'- --aACGCCGgcgcUUUCcGCCgucuggugCACGAGGc -3'
miRNA:   3'- acaUGCGGCa---AAAGcCGGa-------GUGCUCC- -5'
1555 3' -52.9 NC_001347.2 + 20430 0.67 0.990297
Target:  5'- gGUGCGCCGcag-CGGCUUUgugcCGAGa -3'
miRNA:   3'- aCAUGCGGCaaaaGCCGGAGu---GCUCc -5'
1555 3' -52.9 NC_001347.2 + 78035 0.67 0.990297
Target:  5'- --cACGCCGg---UGGCacaccugCACGAGGa -3'
miRNA:   3'- acaUGCGGCaaaaGCCGga-----GUGCUCC- -5'
1555 3' -52.9 NC_001347.2 + 184474 0.67 0.990297
Target:  5'- cGU-CGuuGUUUucaUCGGCCUCGgGcGGc -3'
miRNA:   3'- aCAuGCggCAAA---AGCCGGAGUgCuCC- -5'
1555 3' -52.9 NC_001347.2 + 175059 0.67 0.990297
Target:  5'- --gGCGCCGUcUUCGGCgugcaUCcCGAGa -3'
miRNA:   3'- acaUGCGGCAaAAGCCGg----AGuGCUCc -5'
1555 3' -52.9 NC_001347.2 + 168365 0.67 0.989537
Target:  5'- gGUGcCGCCGcucugUUCGGCuauuacggucuggauCUCGCGcAGGg -3'
miRNA:   3'- aCAU-GCGGCaa---AAGCCG---------------GAGUGC-UCC- -5'
1555 3' -52.9 NC_001347.2 + 143668 0.67 0.986023
Target:  5'- --gGCGCCGga---GGCCggcCugGAGGu -3'
miRNA:   3'- acaUGCGGCaaaagCCGGa--GugCUCC- -5'
1555 3' -52.9 NC_001347.2 + 182860 0.68 0.97588
Target:  5'- --cGCGCCGUgggaUCGGCUUCGagauCGAGc -3'
miRNA:   3'- acaUGCGGCAaa--AGCCGGAGU----GCUCc -5'
1555 3' -52.9 NC_001347.2 + 173075 0.68 0.97588
Target:  5'- uUGUGCGCgaaagCGagaaUUCGGCCgugCACGuGGa -3'
miRNA:   3'- -ACAUGCG-----GCaa--AAGCCGGa--GUGCuCC- -5'
1555 3' -52.9 NC_001347.2 + 136104 0.68 0.97588
Target:  5'- --gGCGCCGggccUCGGCCg-GgGAGGg -3'
miRNA:   3'- acaUGCGGCaaa-AGCCGGagUgCUCC- -5'
1555 3' -52.9 NC_001347.2 + 87145 0.68 0.97588
Target:  5'- --aACGCCGUa---GGCCggcUACGGGGa -3'
miRNA:   3'- acaUGCGGCAaaagCCGGa--GUGCUCC- -5'
1555 3' -52.9 NC_001347.2 + 84619 0.68 0.973331
Target:  5'- ---cCGUCGUgggUGGCCUCGCGGuGGc -3'
miRNA:   3'- acauGCGGCAaaaGCCGGAGUGCU-CC- -5'
1555 3' -52.9 NC_001347.2 + 1728 0.68 0.970593
Target:  5'- -cUGCGCCGgcggUgGGCCggCACGAcGGu -3'
miRNA:   3'- acAUGCGGCaaa-AgCCGGa-GUGCU-CC- -5'
1555 3' -52.9 NC_001347.2 + 1211 0.68 0.970593
Target:  5'- --cGCGgCGUUUUUGGCCaacagCACGGGc -3'
miRNA:   3'- acaUGCgGCAAAAGCCGGa----GUGCUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.