Results 1 - 20 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1555 | 5' | -61.4 | NC_001347.2 | + | 152990 | 0.66 | 0.790539 |
Target: 5'- gGCCAcCAUGgcGUCGgaGGCGGUGgGc -3' miRNA: 3'- gCGGU-GUACuuCGGCg-CCGCCGCgCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 1950 | 0.66 | 0.790539 |
Target: 5'- gGCUGCGcggcGggGCCGgcgacggggaCGGCGGCGgGg -3' miRNA: 3'- gCGGUGUa---CuuCGGC----------GCCGCCGCgCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 159462 | 0.66 | 0.790539 |
Target: 5'- gGCCGCucgaugacgAUGucGgCGCGGCGGCuGCu- -3' miRNA: 3'- gCGGUG---------UACuuCgGCGCCGCCG-CGca -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 148602 | 0.66 | 0.781906 |
Target: 5'- gGCgGCGUGAccggcggugcGGUCGCGGgUGGCcgGCGUc -3' miRNA: 3'- gCGgUGUACU----------UCGGCGCC-GCCG--CGCA- -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 117884 | 0.66 | 0.781906 |
Target: 5'- gCGaCCACGUcagacGggGCgGCGGCGGguccCGUGa -3' miRNA: 3'- -GC-GGUGUA-----CuuCGgCGCCGCC----GCGCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 14295 | 0.66 | 0.781906 |
Target: 5'- uGCCGCcgGAGcuccccgcgcuGCCuGUGGCGGC-CGa -3' miRNA: 3'- gCGGUGuaCUU-----------CGG-CGCCGCCGcGCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 182292 | 0.66 | 0.781906 |
Target: 5'- uGCgGCGUcGuuGCCGgGGCGGCuGCu- -3' miRNA: 3'- gCGgUGUA-CuuCGGCgCCGCCG-CGca -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 7821 | 0.66 | 0.781906 |
Target: 5'- aCGUgGCGUGAcgaAGCUGguaCGGUGGCgGCGg -3' miRNA: 3'- -GCGgUGUACU---UCGGC---GCCGCCG-CGCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 74727 | 0.66 | 0.781036 |
Target: 5'- gCGCgAaGUGAGGCCGUaguccacGGUGGUGCa- -3' miRNA: 3'- -GCGgUgUACUUCGGCG-------CCGCCGCGca -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 173979 | 0.66 | 0.773154 |
Target: 5'- gGCCGCGUGccuGGgaaCGCGcGCacGGCGCGg -3' miRNA: 3'- gCGGUGUACu--UCg--GCGC-CG--CCGCGCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 81592 | 0.66 | 0.767848 |
Target: 5'- uCGCCGCcgGccggucgcucgcgaaAAGCCGUGGCauugagacgcacGGCGCc- -3' miRNA: 3'- -GCGGUGuaC---------------UUCGGCGCCG------------CCGCGca -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 119075 | 0.66 | 0.76429 |
Target: 5'- aCGCCGC-UGAacccagcggcgcAGCCGCGcuauGCGGCcCGg -3' miRNA: 3'- -GCGGUGuACU------------UCGGCGC----CGCCGcGCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 108201 | 0.66 | 0.755322 |
Target: 5'- gCGCaggcaGCAUGGAGUCGCG-CGGuCGCc- -3' miRNA: 3'- -GCGg----UGUACUUCGGCGCcGCC-GCGca -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 25353 | 0.66 | 0.755322 |
Target: 5'- uGCCGCGUGgcGCUGCacaccuauGGCGcCGUGg -3' miRNA: 3'- gCGGUGUACuuCGGCG--------CCGCcGCGCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 19105 | 0.66 | 0.749895 |
Target: 5'- cCGCC-CAUGu-GCCGCGuuccguacaacgaauGCGGCGuCGa -3' miRNA: 3'- -GCGGuGUACuuCGGCGC---------------CGCCGC-GCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 78661 | 0.66 | 0.746258 |
Target: 5'- uGCC-CGUguugGAGGCCGUGcGCaaGGCGCGc -3' miRNA: 3'- gCGGuGUA----CUUCGGCGC-CG--CCGCGCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 117427 | 0.66 | 0.746258 |
Target: 5'- uCGCCAC--GGAGUC-CGGCGGauCGCGg -3' miRNA: 3'- -GCGGUGuaCUUCGGcGCCGCC--GCGCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 187351 | 0.66 | 0.746258 |
Target: 5'- gCGUUGCGUG--GCCGUGGCGcGuCGCGg -3' miRNA: 3'- -GCGGUGUACuuCGGCGCCGC-C-GCGCa -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 84617 | 0.66 | 0.746258 |
Target: 5'- aGCCGuCGUGGguGGCCucGCGGUGGCuGCc- -3' miRNA: 3'- gCGGU-GUACU--UCGG--CGCCGCCG-CGca -5' |
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1555 | 5' | -61.4 | NC_001347.2 | + | 47071 | 0.66 | 0.746258 |
Target: 5'- uGCUAC----AGCUGCGGCGGCGa-- -3' miRNA: 3'- gCGGUGuacuUCGGCGCCGCCGCgca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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