miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1555 5' -61.4 NC_001347.2 + 159462 0.66 0.790539
Target:  5'- gGCCGCucgaugacgAUGucGgCGCGGCGGCuGCu- -3'
miRNA:   3'- gCGGUG---------UACuuCgGCGCCGCCG-CGca -5'
1555 5' -61.4 NC_001347.2 + 152990 0.66 0.790539
Target:  5'- gGCCAcCAUGgcGUCGgaGGCGGUGgGc -3'
miRNA:   3'- gCGGU-GUACuuCGGCg-CCGCCGCgCa -5'
1555 5' -61.4 NC_001347.2 + 1950 0.66 0.790539
Target:  5'- gGCUGCGcggcGggGCCGgcgacggggaCGGCGGCGgGg -3'
miRNA:   3'- gCGGUGUa---CuuCGGC----------GCCGCCGCgCa -5'
1555 5' -61.4 NC_001347.2 + 7821 0.66 0.781906
Target:  5'- aCGUgGCGUGAcgaAGCUGguaCGGUGGCgGCGg -3'
miRNA:   3'- -GCGgUGUACU---UCGGC---GCCGCCG-CGCa -5'
1555 5' -61.4 NC_001347.2 + 182292 0.66 0.781906
Target:  5'- uGCgGCGUcGuuGCCGgGGCGGCuGCu- -3'
miRNA:   3'- gCGgUGUA-CuuCGGCgCCGCCG-CGca -5'
1555 5' -61.4 NC_001347.2 + 14295 0.66 0.781906
Target:  5'- uGCCGCcgGAGcuccccgcgcuGCCuGUGGCGGC-CGa -3'
miRNA:   3'- gCGGUGuaCUU-----------CGG-CGCCGCCGcGCa -5'
1555 5' -61.4 NC_001347.2 + 117884 0.66 0.781906
Target:  5'- gCGaCCACGUcagacGggGCgGCGGCGGguccCGUGa -3'
miRNA:   3'- -GC-GGUGUA-----CuuCGgCGCCGCC----GCGCa -5'
1555 5' -61.4 NC_001347.2 + 148602 0.66 0.781906
Target:  5'- gGCgGCGUGAccggcggugcGGUCGCGGgUGGCcgGCGUc -3'
miRNA:   3'- gCGgUGUACU----------UCGGCGCC-GCCG--CGCA- -5'
1555 5' -61.4 NC_001347.2 + 74727 0.66 0.781036
Target:  5'- gCGCgAaGUGAGGCCGUaguccacGGUGGUGCa- -3'
miRNA:   3'- -GCGgUgUACUUCGGCG-------CCGCCGCGca -5'
1555 5' -61.4 NC_001347.2 + 173979 0.66 0.773154
Target:  5'- gGCCGCGUGccuGGgaaCGCGcGCacGGCGCGg -3'
miRNA:   3'- gCGGUGUACu--UCg--GCGC-CG--CCGCGCa -5'
1555 5' -61.4 NC_001347.2 + 81592 0.66 0.767848
Target:  5'- uCGCCGCcgGccggucgcucgcgaaAAGCCGUGGCauugagacgcacGGCGCc- -3'
miRNA:   3'- -GCGGUGuaC---------------UUCGGCGCCG------------CCGCGca -5'
1555 5' -61.4 NC_001347.2 + 119075 0.66 0.76429
Target:  5'- aCGCCGC-UGAacccagcggcgcAGCCGCGcuauGCGGCcCGg -3'
miRNA:   3'- -GCGGUGuACU------------UCGGCGC----CGCCGcGCa -5'
1555 5' -61.4 NC_001347.2 + 108201 0.66 0.755322
Target:  5'- gCGCaggcaGCAUGGAGUCGCG-CGGuCGCc- -3'
miRNA:   3'- -GCGg----UGUACUUCGGCGCcGCC-GCGca -5'
1555 5' -61.4 NC_001347.2 + 25353 0.66 0.755322
Target:  5'- uGCCGCGUGgcGCUGCacaccuauGGCGcCGUGg -3'
miRNA:   3'- gCGGUGUACuuCGGCG--------CCGCcGCGCa -5'
1555 5' -61.4 NC_001347.2 + 19105 0.66 0.749895
Target:  5'- cCGCC-CAUGu-GCCGCGuuccguacaacgaauGCGGCGuCGa -3'
miRNA:   3'- -GCGGuGUACuuCGGCGC---------------CGCCGC-GCa -5'
1555 5' -61.4 NC_001347.2 + 47071 0.66 0.746258
Target:  5'- uGCUAC----AGCUGCGGCGGCGa-- -3'
miRNA:   3'- gCGGUGuacuUCGGCGCCGCCGCgca -5'
1555 5' -61.4 NC_001347.2 + 84617 0.66 0.746258
Target:  5'- aGCCGuCGUGGguGGCCucGCGGUGGCuGCc- -3'
miRNA:   3'- gCGGU-GUACU--UCGG--CGCCGCCG-CGca -5'
1555 5' -61.4 NC_001347.2 + 187351 0.66 0.746258
Target:  5'- gCGUUGCGUG--GCCGUGGCGcGuCGCGg -3'
miRNA:   3'- -GCGGUGUACuuCGGCGCCGC-C-GCGCa -5'
1555 5' -61.4 NC_001347.2 + 117427 0.66 0.746258
Target:  5'- uCGCCAC--GGAGUC-CGGCGGauCGCGg -3'
miRNA:   3'- -GCGGUGuaCUUCGGcGCCGCC--GCGCa -5'
1555 5' -61.4 NC_001347.2 + 78661 0.66 0.746258
Target:  5'- uGCC-CGUguugGAGGCCGUGcGCaaGGCGCGc -3'
miRNA:   3'- gCGGuGUA----CUUCGGCGC-CG--CCGCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.