Results 1 - 20 of 210 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15662 | 5' | -58.7 | NC_004065.1 | + | 2056 | 1.11 | 0.002351 |
Target: 5'- aCCGCGAUCGCCGCCGCGUUCAGACCGg -3' miRNA: 3'- -GGCGCUAGCGGCGGCGCAAGUCUGGC- -5' |
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15662 | 5' | -58.7 | NC_004065.1 | + | 7182 | 0.66 | 0.917419 |
Target: 5'- aUCGCGAUCGUCauGCuCGUcugcuucucGUUCGGugCGu -3' miRNA: 3'- -GGCGCUAGCGG--CG-GCG---------CAAGUCugGC- -5' |
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15662 | 5' | -58.7 | NC_004065.1 | + | 13196 | 0.69 | 0.789733 |
Target: 5'- aCCGaaagaauaGAUCGUCGCgGCGaacagCAGACCc -3' miRNA: 3'- -GGCg-------CUAGCGGCGgCGCaa---GUCUGGc -5' |
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15662 | 5' | -58.7 | NC_004065.1 | + | 17674 | 0.69 | 0.772385 |
Target: 5'- aCCGaCGGUCGuCCGUCGCGccaUCGccguGGCCGu -3' miRNA: 3'- -GGC-GCUAGC-GGCGGCGCa--AGU----CUGGC- -5' |
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15662 | 5' | -58.7 | NC_004065.1 | + | 17843 | 0.68 | 0.830795 |
Target: 5'- uCUGgGAUUGCCGCCGaGUcgagCAG-CCGa -3' miRNA: 3'- -GGCgCUAGCGGCGGCgCAa---GUCuGGC- -5' |
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15662 | 5' | -58.7 | NC_004065.1 | + | 18324 | 0.74 | 0.518947 |
Target: 5'- gCgGCGGUCGCUGCCGCcaucGUcgagaUCAGACuCGa -3' miRNA: 3'- -GgCGCUAGCGGCGGCG----CA-----AGUCUG-GC- -5' |
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15662 | 5' | -58.7 | NC_004065.1 | + | 19954 | 0.66 | 0.911941 |
Target: 5'- gCCGCa--CGCCuCCGCGuUUCAG-CCGu -3' miRNA: 3'- -GGCGcuaGCGGcGGCGC-AAGUCuGGC- -5' |
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15662 | 5' | -58.7 | NC_004065.1 | + | 20632 | 0.71 | 0.680253 |
Target: 5'- uCCGCGAccguaUCGCCGUCucCGUcgCAGGCCu -3' miRNA: 3'- -GGCGCU-----AGCGGCGGc-GCAa-GUCUGGc -5' |
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15662 | 5' | -58.7 | NC_004065.1 | + | 20982 | 0.78 | 0.316944 |
Target: 5'- gCCGUGAUCGCCGUCGuCGccgUCGGuGCCGu -3' miRNA: 3'- -GGCGCUAGCGGCGGC-GCa--AGUC-UGGC- -5' |
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15662 | 5' | -58.7 | NC_004065.1 | + | 22324 | 0.71 | 0.66117 |
Target: 5'- gCGCGGguuggGCCGCCGCGacC-GACCGg -3' miRNA: 3'- gGCGCUag---CGGCGGCGCaaGuCUGGC- -5' |
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15662 | 5' | -58.7 | NC_004065.1 | + | 24780 | 0.71 | 0.680253 |
Target: 5'- gCCGUcGUCGCUGCCGCcgccaucUUgGGGCCGg -3' miRNA: 3'- -GGCGcUAGCGGCGGCGc------AAgUCUGGC- -5' |
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15662 | 5' | -58.7 | NC_004065.1 | + | 25104 | 0.66 | 0.917419 |
Target: 5'- gCCGCcGUCGCCGCCaacaUCGGgcGCCGc -3' miRNA: 3'- -GGCGcUAGCGGCGGcgcaAGUC--UGGC- -5' |
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15662 | 5' | -58.7 | NC_004065.1 | + | 26300 | 0.68 | 0.806581 |
Target: 5'- cUCGCGGuUCGaCGCCGCGUgCGaGCCGc -3' miRNA: 3'- -GGCGCU-AGCgGCGGCGCAaGUcUGGC- -5' |
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15662 | 5' | -58.7 | NC_004065.1 | + | 27413 | 0.69 | 0.788877 |
Target: 5'- -gGCGuuUUGCCGCgGCGUguguugcUCGGACCc -3' miRNA: 3'- ggCGCu-AGCGGCGgCGCA-------AGUCUGGc -5' |
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15662 | 5' | -58.7 | NC_004065.1 | + | 27925 | 0.7 | 0.736429 |
Target: 5'- aCGCGAgCGCCGCCGacagaGacgCAGugCGc -3' miRNA: 3'- gGCGCUaGCGGCGGCg----Caa-GUCugGC- -5' |
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15662 | 5' | -58.7 | NC_004065.1 | + | 30224 | 0.68 | 0.838557 |
Target: 5'- gCCGC---CGCCGCCGCcgcCAGcACCGg -3' miRNA: 3'- -GGCGcuaGCGGCGGCGcaaGUC-UGGC- -5' |
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15662 | 5' | -58.7 | NC_004065.1 | + | 30588 | 0.66 | 0.894267 |
Target: 5'- gCCGCGGcgagCGCCucguCCGCGUUCcgAGGCa- -3' miRNA: 3'- -GGCGCUa---GCGGc---GGCGCAAG--UCUGgc -5' |
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15662 | 5' | -58.7 | NC_004065.1 | + | 30841 | 0.67 | 0.881472 |
Target: 5'- aCGCGGacgaggcgcUCGCCGCgGCGgaacggGGGCUGg -3' miRNA: 3'- gGCGCU---------AGCGGCGgCGCaag---UCUGGC- -5' |
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15662 | 5' | -58.7 | NC_004065.1 | + | 30981 | 0.66 | 0.900363 |
Target: 5'- gUGgGAUgCGCuCGCCGCGU-CGGGCg- -3' miRNA: 3'- gGCgCUA-GCG-GCGGCGCAaGUCUGgc -5' |
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15662 | 5' | -58.7 | NC_004065.1 | + | 32248 | 0.67 | 0.860831 |
Target: 5'- gUCGCGGUCGCCGgCG-GUUCcaaggGGAUgGa -3' miRNA: 3'- -GGCGCUAGCGGCgGCgCAAG-----UCUGgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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