Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15665 | 3' | -57 | NC_004065.1 | + | 76067 | 0.66 | 0.924029 |
Target: 5'- uCAUCUGUCguCguGCCAgGUGCCUc- -3' miRNA: 3'- -GUGGGCAGguGguCGGUgCAUGGAag -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 128164 | 0.66 | 0.929191 |
Target: 5'- uCGCCgGgCCGCCAGCCGCuGUuuCCg-- -3' miRNA: 3'- -GUGGgCaGGUGGUCGGUG-CAu-GGaag -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 100031 | 0.66 | 0.924029 |
Target: 5'- uCGCCuCGUCCGCCGcccCCGCG-GCgUUCu -3' miRNA: 3'- -GUGG-GCAGGUGGUc--GGUGCaUGgAAG- -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 109913 | 0.66 | 0.924029 |
Target: 5'- gGCUCGUCCGCCGcggccgccGUCGCGUcCCg-- -3' miRNA: 3'- gUGGGCAGGUGGU--------CGGUGCAuGGaag -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 138805 | 0.66 | 0.918643 |
Target: 5'- uCGCCgucaGUCCGCC-GCCGCucGUGCCg-- -3' miRNA: 3'- -GUGGg---CAGGUGGuCGGUG--CAUGGaag -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 207971 | 0.66 | 0.938843 |
Target: 5'- uGCUCGggagCCGCCAGCuuCAUG-AUCUUCa -3' miRNA: 3'- gUGGGCa---GGUGGUCG--GUGCaUGGAAG- -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 100288 | 0.66 | 0.934128 |
Target: 5'- uGCUCGcCCACCucgcacgaGGCCGCGaUGUCUUCg -3' miRNA: 3'- gUGGGCaGGUGG--------UCGGUGC-AUGGAAG- -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 78816 | 0.66 | 0.918092 |
Target: 5'- -uCCCGUUcgacuucaagucgCACCGGCgcaCACGUGCCUg- -3' miRNA: 3'- guGGGCAG-------------GUGGUCG---GUGCAUGGAag -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 33250 | 0.66 | 0.928685 |
Target: 5'- gACCuCGU-CACCGGCCugGUccgcgagGCCUccgUCa -3' miRNA: 3'- gUGG-GCAgGUGGUCGGugCA-------UGGA---AG- -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 109579 | 0.66 | 0.918643 |
Target: 5'- cCGCCUGUCUcCUGGCgGCGUAUCa-- -3' miRNA: 3'- -GUGGGCAGGuGGUCGgUGCAUGGaag -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 222647 | 0.66 | 0.934128 |
Target: 5'- gACCCGUCCACguGgCGCGcaguucaACCggaUCg -3' miRNA: 3'- gUGGGCAGGUGguCgGUGCa------UGGa--AG- -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 72089 | 0.66 | 0.940666 |
Target: 5'- cCugCCGcucUCCACCAGCagcucgcguauguCGUACCUc- -3' miRNA: 3'- -GugGGC---AGGUGGUCGgu-----------GCAUGGAag -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 220561 | 0.67 | 0.892956 |
Target: 5'- aGCCgGUCUccucGCCAacgagacguguuucGCCACGUGCCg-- -3' miRNA: 3'- gUGGgCAGG----UGGU--------------CGGUGCAUGGaag -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 147140 | 0.67 | 0.887734 |
Target: 5'- -cCCCGUCUGCCgcaucaccguGGCCaugagcgGCGUGCuCUUCg -3' miRNA: 3'- guGGGCAGGUGG----------UCGG-------UGCAUG-GAAG- -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 139045 | 0.67 | 0.89488 |
Target: 5'- -gUCCGUCCGCCAGagguuuuccgaCCgcaGCGUGCCcgUCu -3' miRNA: 3'- guGGGCAGGUGGUC-----------GG---UGCAUGGa-AG- -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 28739 | 0.67 | 0.90115 |
Target: 5'- -cCCCGgCCGCCggagGGCCaaaguacuccaaGCGUACCUUUc -3' miRNA: 3'- guGGGCaGGUGG----UCGG------------UGCAUGGAAG- -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 96566 | 0.67 | 0.90115 |
Target: 5'- gACUCGUCCGCCgacgAGCCGCG-ACg--- -3' miRNA: 3'- gUGGGCAGGUGG----UCGGUGCaUGgaag -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 163579 | 0.67 | 0.887734 |
Target: 5'- gCugCCGUCCGCCaccagAGUCAagaggcuggcgccCGUGCCgUCg -3' miRNA: 3'- -GugGGCAGGUGG-----UCGGU-------------GCAUGGaAG- -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 115451 | 0.67 | 0.881698 |
Target: 5'- -cCCCGUCgCGgCGGCCACG-GCCg-- -3' miRNA: 3'- guGGGCAG-GUgGUCGGUGCaUGGaag -5' |
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15665 | 3' | -57 | NC_004065.1 | + | 65954 | 0.67 | 0.881698 |
Target: 5'- uGCgCGUCCACCAGCuCGCacGCCcgCg -3' miRNA: 3'- gUGgGCAGGUGGUCG-GUGcaUGGaaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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