miRNA display CGI


Results 1 - 20 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15665 3' -57 NC_004065.1 + 36509 0.67 0.89488
Target:  5'- aACaUCGUa-GCCAGCCGCGacacgACCUUCa -3'
miRNA:   3'- gUG-GGCAggUGGUCGGUGCa----UGGAAG- -5'
15665 3' -57 NC_004065.1 + 7321 0.68 0.867685
Target:  5'- aACCucuaCGUCCGCCGGCUgAUGUAUCUg- -3'
miRNA:   3'- gUGG----GCAGGUGGUCGG-UGCAUGGAag -5'
15665 3' -57 NC_004065.1 + 127857 0.68 0.867685
Target:  5'- -cCUCGUCUGCCucGCCAgGUACCUc- -3'
miRNA:   3'- guGGGCAGGUGGu-CGGUgCAUGGAag -5'
15665 3' -57 NC_004065.1 + 187630 0.68 0.867685
Target:  5'- -uUCCGUCaucaCAUCGGCCACGUACa-UCa -3'
miRNA:   3'- guGGGCAG----GUGGUCGGUGCAUGgaAG- -5'
15665 3' -57 NC_004065.1 + 97206 0.68 0.874793
Target:  5'- gCGCCUGUagGCCAGCCugGggAUgUUCg -3'
miRNA:   3'- -GUGGGCAggUGGUCGGugCa-UGgAAG- -5'
15665 3' -57 NC_004065.1 + 112561 0.68 0.874793
Target:  5'- aCACCUuccuccuucuuGUCCAUgGGCgGCGUGCUgcgUCg -3'
miRNA:   3'- -GUGGG-----------CAGGUGgUCGgUGCAUGGa--AG- -5'
15665 3' -57 NC_004065.1 + 115994 0.68 0.874793
Target:  5'- gCGCUCGUCCGCCGacgugcGCCGCGgggGCagcUCu -3'
miRNA:   3'- -GUGGGCAGGUGGU------CGGUGCa--UGga-AG- -5'
15665 3' -57 NC_004065.1 + 147140 0.67 0.887734
Target:  5'- -cCCCGUCUGCCgcaucaccguGGCCaugagcgGCGUGCuCUUCg -3'
miRNA:   3'- guGGGCAGGUGG----------UCGG-------UGCAUG-GAAG- -5'
15665 3' -57 NC_004065.1 + 220561 0.67 0.892956
Target:  5'- aGCCgGUCUccucGCCAacgagacguguuucGCCACGUGCCg-- -3'
miRNA:   3'- gUGGgCAGG----UGGU--------------CGGUGCAUGGaag -5'
15665 3' -57 NC_004065.1 + 209731 0.68 0.852878
Target:  5'- uCACCaaaGUCCACCacacgAGCgCACGUAUCa-- -3'
miRNA:   3'- -GUGGg--CAGGUGG-----UCG-GUGCAUGGaag -5'
15665 3' -57 NC_004065.1 + 93352 0.68 0.845191
Target:  5'- gGCCCG-CCGCCGGCCagACccGCCcgUCg -3'
miRNA:   3'- gUGGGCaGGUGGUCGG--UGcaUGGa-AG- -5'
15665 3' -57 NC_004065.1 + 169090 0.68 0.837323
Target:  5'- aUACCCGUCUucUUGGCCACGU-CCUg- -3'
miRNA:   3'- -GUGGGCAGGu-GGUCGGUGCAuGGAag -5'
15665 3' -57 NC_004065.1 + 78542 0.72 0.623708
Target:  5'- aGCCCGUCCGCguGCCGC-UGCUc-- -3'
miRNA:   3'- gUGGGCAGGUGguCGGUGcAUGGaag -5'
15665 3' -57 NC_004065.1 + 70309 0.72 0.653422
Target:  5'- gCACCCc-CCACaCGGCCGCGUACaggaaCUUCg -3'
miRNA:   3'- -GUGGGcaGGUG-GUCGGUGCAUG-----GAAG- -5'
15665 3' -57 NC_004065.1 + 198852 0.72 0.653422
Target:  5'- uGCCCGaUCCGCaCA-CCACGUACCa-- -3'
miRNA:   3'- gUGGGC-AGGUG-GUcGGUGCAUGGaag -5'
15665 3' -57 NC_004065.1 + 20458 0.72 0.673163
Target:  5'- aCGCCCG-CCAgCCAGCCGgcCGggccuCCUUCa -3'
miRNA:   3'- -GUGGGCaGGU-GGUCGGU--GCau---GGAAG- -5'
15665 3' -57 NC_004065.1 + 88739 0.71 0.712205
Target:  5'- aGCaCGUCCACCAGCUugGUGgCg-- -3'
miRNA:   3'- gUGgGCAGGUGGUCGGugCAUgGaag -5'
15665 3' -57 NC_004065.1 + 152293 0.69 0.80417
Target:  5'- uCGCCCaGUCCugCGGCgGCGgcggUGCCggCg -3'
miRNA:   3'- -GUGGG-CAGGugGUCGgUGC----AUGGaaG- -5'
15665 3' -57 NC_004065.1 + 131895 0.69 0.81185
Target:  5'- gCGCaCCG-CCGCC-GCCugGUucgaguuGCCUUCg -3'
miRNA:   3'- -GUG-GGCaGGUGGuCGGugCA-------UGGAAG- -5'
15665 3' -57 NC_004065.1 + 125134 0.69 0.812695
Target:  5'- cCGCgCCGUCgC-CCAGCCGCGUGgCg-- -3'
miRNA:   3'- -GUG-GGCAG-GuGGUCGGUGCAUgGaag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.