miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15665 3' -57 NC_004065.1 + 6937 1.08 0.004117
Target:  5'- cCACCCGUCCACCAGCCACGUACCUUCc -3'
miRNA:   3'- -GUGGGCAGGUGGUCGGUGCAUGGAAG- -5'
15665 3' -57 NC_004065.1 + 162729 0.78 0.330908
Target:  5'- -cCUCGUCCugGCCGGCCGCGcgagGCCUUCg -3'
miRNA:   3'- guGGGCAGG--UGGUCGGUGCa---UGGAAG- -5'
15665 3' -57 NC_004065.1 + 23869 0.77 0.391718
Target:  5'- cCGCCCGUCCACCcGCCugcccgccucaccGCcUGCCUUCc -3'
miRNA:   3'- -GUGGGCAGGUGGuCGG-------------UGcAUGGAAG- -5'
15665 3' -57 NC_004065.1 + 72210 0.76 0.434654
Target:  5'- uGCCCGgcUCCACCGGCgGCGUcGCCUcCg -3'
miRNA:   3'- gUGGGC--AGGUGGUCGgUGCA-UGGAaG- -5'
15665 3' -57 NC_004065.1 + 198950 0.74 0.545214
Target:  5'- cCGCCCGUggCCACCAGCCGCGagaagGCg-UCu -3'
miRNA:   3'- -GUGGGCA--GGUGGUCGGUGCa----UGgaAG- -5'
15665 3' -57 NC_004065.1 + 78542 0.72 0.623708
Target:  5'- aGCCCGUCCGCguGCCGC-UGCUc-- -3'
miRNA:   3'- gUGGGCAGGUGguCGGUGcAUGGaag -5'
15665 3' -57 NC_004065.1 + 61515 0.72 0.633616
Target:  5'- aGCCCGUCgAC--GCCGCGcagGCCUUCg -3'
miRNA:   3'- gUGGGCAGgUGguCGGUGCa--UGGAAG- -5'
15665 3' -57 NC_004065.1 + 70309 0.72 0.653422
Target:  5'- gCACCCc-CCACaCGGCCGCGUACaggaaCUUCg -3'
miRNA:   3'- -GUGGGcaGGUG-GUCGGUGCAUG-----GAAG- -5'
15665 3' -57 NC_004065.1 + 198852 0.72 0.653422
Target:  5'- uGCCCGaUCCGCaCA-CCACGUACCa-- -3'
miRNA:   3'- gUGGGC-AGGUG-GUcGGUGCAUGGaag -5'
15665 3' -57 NC_004065.1 + 20458 0.72 0.673163
Target:  5'- aCGCCCG-CCAgCCAGCCGgcCGggccuCCUUCa -3'
miRNA:   3'- -GUGGGCaGGU-GGUCGGU--GCau---GGAAG- -5'
15665 3' -57 NC_004065.1 + 75113 0.71 0.70252
Target:  5'- uGCCCGUCUACCAccGCCGCcucaACCUg- -3'
miRNA:   3'- gUGGGCAGGUGGU--CGGUGca--UGGAag -5'
15665 3' -57 NC_004065.1 + 88739 0.71 0.712205
Target:  5'- aGCaCGUCCACCAGCUugGUGgCg-- -3'
miRNA:   3'- gUGgGCAGGUGGUCGGugCAUgGaag -5'
15665 3' -57 NC_004065.1 + 189152 0.71 0.721827
Target:  5'- gACCCG-CgCACCuGCCGCGUauGCCUg- -3'
miRNA:   3'- gUGGGCaG-GUGGuCGGUGCA--UGGAag -5'
15665 3' -57 NC_004065.1 + 135315 0.7 0.768684
Target:  5'- gGCCCGcUCCGCgGcuGCCGCGUacGCCUg- -3'
miRNA:   3'- gUGGGC-AGGUGgU--CGGUGCA--UGGAag -5'
15665 3' -57 NC_004065.1 + 89606 0.7 0.777747
Target:  5'- -uCCCGgCCugCGGCCuguCGUGCCUc- -3'
miRNA:   3'- guGGGCaGGugGUCGGu--GCAUGGAag -5'
15665 3' -57 NC_004065.1 + 23831 0.7 0.786687
Target:  5'- -nCCUGUUCACCAGCC-CGccUGCCUg- -3'
miRNA:   3'- guGGGCAGGUGGUCGGuGC--AUGGAag -5'
15665 3' -57 NC_004065.1 + 134204 0.69 0.792869
Target:  5'- uGCCCGUCCGCgggucuCGGCCGUGUGagaacauagucaguCCUUCg -3'
miRNA:   3'- gUGGGCAGGUG------GUCGGUGCAU--------------GGAAG- -5'
15665 3' -57 NC_004065.1 + 152293 0.69 0.80417
Target:  5'- uCGCCCaGUCCugCGGCgGCGgcggUGCCggCg -3'
miRNA:   3'- -GUGGG-CAGGugGUCGgUGC----AUGGaaG- -5'
15665 3' -57 NC_004065.1 + 131895 0.69 0.81185
Target:  5'- gCGCaCCG-CCGCC-GCCugGUucgaguuGCCUUCg -3'
miRNA:   3'- -GUG-GGCaGGUGGuCGGugCA-------UGGAAG- -5'
15665 3' -57 NC_004065.1 + 125134 0.69 0.812695
Target:  5'- cCGCgCCGUCgC-CCAGCCGCGUGgCg-- -3'
miRNA:   3'- -GUG-GGCAG-GuGGUCGGUGCAUgGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.