miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15665 3' -57 NC_004065.1 + 6937 1.08 0.004117
Target:  5'- cCACCCGUCCACCAGCCACGUACCUUCc -3'
miRNA:   3'- -GUGGGCAGGUGGUCGGUGCAUGGAAG- -5'
15665 3' -57 NC_004065.1 + 7321 0.68 0.867685
Target:  5'- aACCucuaCGUCCGCCGGCUgAUGUAUCUg- -3'
miRNA:   3'- gUGG----GCAGGUGGUCGG-UGCAUGGAag -5'
15665 3' -57 NC_004065.1 + 20458 0.72 0.673163
Target:  5'- aCGCCCG-CCAgCCAGCCGgcCGggccuCCUUCa -3'
miRNA:   3'- -GUGGGCaGGU-GGUCGGU--GCau---GGAAG- -5'
15665 3' -57 NC_004065.1 + 23831 0.7 0.786687
Target:  5'- -nCCUGUUCACCAGCC-CGccUGCCUg- -3'
miRNA:   3'- guGGGCAGGUGGUCGGuGC--AUGGAag -5'
15665 3' -57 NC_004065.1 + 23869 0.77 0.391718
Target:  5'- cCGCCCGUCCACCcGCCugcccgccucaccGCcUGCCUUCc -3'
miRNA:   3'- -GUGGGCAGGUGGuCGG-------------UGcAUGGAAG- -5'
15665 3' -57 NC_004065.1 + 28739 0.67 0.90115
Target:  5'- -cCCCGgCCGCCggagGGCCaaaguacuccaaGCGUACCUUUc -3'
miRNA:   3'- guGGGCaGGUGG----UCGG------------UGCAUGGAAG- -5'
15665 3' -57 NC_004065.1 + 33250 0.66 0.928685
Target:  5'- gACCuCGU-CACCGGCCugGUccgcgagGCCUccgUCa -3'
miRNA:   3'- gUGG-GCAgGUGGUCGGugCA-------UGGA---AG- -5'
15665 3' -57 NC_004065.1 + 36509 0.67 0.89488
Target:  5'- aACaUCGUa-GCCAGCCGCGacacgACCUUCa -3'
miRNA:   3'- gUG-GGCAggUGGUCGGUGCa----UGGAAG- -5'
15665 3' -57 NC_004065.1 + 48007 0.67 0.888395
Target:  5'- cCACCCcUCCugcCCGGCCAUG-GCCUc- -3'
miRNA:   3'- -GUGGGcAGGu--GGUCGGUGCaUGGAag -5'
15665 3' -57 NC_004065.1 + 48804 0.67 0.913033
Target:  5'- -uCCCGUCCACgCAGCCG---GCCg-- -3'
miRNA:   3'- guGGGCAGGUG-GUCGGUgcaUGGaag -5'
15665 3' -57 NC_004065.1 + 49059 0.67 0.907202
Target:  5'- -cCCCGUCCgGCCAGCUgaccggcaaggAgGUACCggCg -3'
miRNA:   3'- guGGGCAGG-UGGUCGG-----------UgCAUGGaaG- -5'
15665 3' -57 NC_004065.1 + 50017 0.68 0.867685
Target:  5'- uGCCUGUCCcgACCuGCUGCGcGCCgUCa -3'
miRNA:   3'- gUGGGCAGG--UGGuCGGUGCaUGGaAG- -5'
15665 3' -57 NC_004065.1 + 61515 0.72 0.633616
Target:  5'- aGCCCGUCgAC--GCCGCGcagGCCUUCg -3'
miRNA:   3'- gUGGGCAGgUGguCGGUGCa--UGGAAG- -5'
15665 3' -57 NC_004065.1 + 65248 0.67 0.89488
Target:  5'- aCAUCCGcaugaucucCCugCAcGCCACGUACCg-- -3'
miRNA:   3'- -GUGGGCa--------GGugGU-CGGUGCAUGGaag -5'
15665 3' -57 NC_004065.1 + 65954 0.67 0.881698
Target:  5'- uGCgCGUCCACCAGCuCGCacGCCcgCg -3'
miRNA:   3'- gUGgGCAGGUGGUCG-GUGcaUGGaaG- -5'
15665 3' -57 NC_004065.1 + 70309 0.72 0.653422
Target:  5'- gCACCCc-CCACaCGGCCGCGUACaggaaCUUCg -3'
miRNA:   3'- -GUGGGcaGGUG-GUCGGUGCAUG-----GAAG- -5'
15665 3' -57 NC_004065.1 + 72089 0.66 0.940666
Target:  5'- cCugCCGcucUCCACCAGCagcucgcguauguCGUACCUc- -3'
miRNA:   3'- -GugGGC---AGGUGGUCGgu-----------GCAUGGAag -5'
15665 3' -57 NC_004065.1 + 72210 0.76 0.434654
Target:  5'- uGCCCGgcUCCACCGGCgGCGUcGCCUcCg -3'
miRNA:   3'- gUGGGC--AGGUGGUCGgUGCA-UGGAaG- -5'
15665 3' -57 NC_004065.1 + 75113 0.71 0.70252
Target:  5'- uGCCCGUCUACCAccGCCGCcucaACCUg- -3'
miRNA:   3'- gUGGGCAGGUGGU--CGGUGca--UGGAag -5'
15665 3' -57 NC_004065.1 + 76067 0.66 0.924029
Target:  5'- uCAUCUGUCguCguGCCAgGUGCCUc- -3'
miRNA:   3'- -GUGGGCAGguGguCGGUgCAUGGAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.