miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15670 5' -55.7 NC_004065.1 + 114671 0.66 0.967925
Target:  5'- gGAGAccgcuaUCGGGCcgaUCGcccGCCUCaGCaGCAGCCc -3'
miRNA:   3'- -CUCU------AGUCUG---AGC---UGGAG-CG-CGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 56305 0.66 0.967925
Target:  5'- aGAGAaucaucUUAGAgUCGACCUgagagagucUG-GCAGCCa -3'
miRNA:   3'- -CUCU------AGUCUgAGCUGGA---------GCgCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 88293 0.66 0.967019
Target:  5'- -uGAUgAGGCcggcguucacguccUCGGCCUCGuCGC-GCCu -3'
miRNA:   3'- cuCUAgUCUG--------------AGCUGGAGC-GCGuCGG- -5'
15670 5' -55.7 NC_004065.1 + 75728 0.66 0.964836
Target:  5'- uGAGAacCGGGC-CGugUUUGCGCAGgCu -3'
miRNA:   3'- -CUCUa-GUCUGaGCugGAGCGCGUCgG- -5'
15670 5' -55.7 NC_004065.1 + 162626 0.66 0.964836
Target:  5'- gGAGA-CAGGCacauuacUGGCCUCGgCGCccAGCCu -3'
miRNA:   3'- -CUCUaGUCUGa------GCUGGAGC-GCG--UCGG- -5'
15670 5' -55.7 NC_004065.1 + 25599 0.66 0.964836
Target:  5'- uGAGcagCAGGC-CGAUCUCGaUGgGGCCu -3'
miRNA:   3'- -CUCua-GUCUGaGCUGGAGC-GCgUCGG- -5'
15670 5' -55.7 NC_004065.1 + 140491 0.66 0.964836
Target:  5'- uGGGAcuaUCGGAUaCGACaUCG-GCGGCCg -3'
miRNA:   3'- -CUCU---AGUCUGaGCUGgAGCgCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 229365 0.66 0.961546
Target:  5'- -cGAgCGGguGCUCG-CUaCGCGCGGCCg -3'
miRNA:   3'- cuCUaGUC--UGAGCuGGaGCGCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 109599 0.66 0.961546
Target:  5'- --uAUCAGgccgcGCUCGACCcccgggcCGCGguGCCc -3'
miRNA:   3'- cucUAGUC-----UGAGCUGGa------GCGCguCGG- -5'
15670 5' -55.7 NC_004065.1 + 99429 0.66 0.961546
Target:  5'- cGAGcggCAGACgccgccUCGACaUCGCGC-GCCu -3'
miRNA:   3'- -CUCua-GUCUG------AGCUGgAGCGCGuCGG- -5'
15670 5' -55.7 NC_004065.1 + 43521 0.66 0.961546
Target:  5'- gGAGAUCcGACcCGGuCCgCGCGCAGagaCg -3'
miRNA:   3'- -CUCUAGuCUGaGCU-GGaGCGCGUCg--G- -5'
15670 5' -55.7 NC_004065.1 + 64913 0.66 0.961546
Target:  5'- -uGGUgCAGAuCUCGGCCagcacggcggaCGCGCGGUCg -3'
miRNA:   3'- cuCUA-GUCU-GAGCUGGa----------GCGCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 63579 0.66 0.961546
Target:  5'- gGAGAUCuacCUCGACCUCGauggggaaaGCA-CCg -3'
miRNA:   3'- -CUCUAGucuGAGCUGGAGCg--------CGUcGG- -5'
15670 5' -55.7 NC_004065.1 + 64623 0.66 0.961205
Target:  5'- aGAGA-CGGACuuccagaaggccaUCGACCgCGCGUccgccgugcuGGCCg -3'
miRNA:   3'- -CUCUaGUCUG-------------AGCUGGaGCGCG----------UCGG- -5'
15670 5' -55.7 NC_004065.1 + 122514 0.66 0.958047
Target:  5'- cAGGUCGGugUCGGCgCgggaGCaGCGGCg -3'
miRNA:   3'- cUCUAGUCugAGCUG-Gag--CG-CGUCGg -5'
15670 5' -55.7 NC_004065.1 + 70946 0.66 0.958047
Target:  5'- -cGGUUGGugUCcacguccaGGcCCUCGgGCAGCCu -3'
miRNA:   3'- cuCUAGUCugAG--------CU-GGAGCgCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 32721 0.66 0.958047
Target:  5'- aGAGGUCcauGAacuuggCGGCgUCGCGCgagaAGCCg -3'
miRNA:   3'- -CUCUAGu--CUga----GCUGgAGCGCG----UCGG- -5'
15670 5' -55.7 NC_004065.1 + 158715 0.66 0.958047
Target:  5'- -uGGUCugcgcgcccGACgugCGACCa-GCGCGGCCa -3'
miRNA:   3'- cuCUAGu--------CUGa--GCUGGagCGCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 120885 0.66 0.958047
Target:  5'- cGGGGUCAGGg-CGGCgUCuCGCGGCg -3'
miRNA:   3'- -CUCUAGUCUgaGCUGgAGcGCGUCGg -5'
15670 5' -55.7 NC_004065.1 + 199492 0.66 0.955846
Target:  5'- aAGAUCAcGuacgucucuucccacGCggCGGCCgccacgugCGCGCAGCCg -3'
miRNA:   3'- cUCUAGU-C---------------UGa-GCUGGa-------GCGCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.