miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15670 5' -55.7 NC_004065.1 + 229365 0.66 0.961546
Target:  5'- -cGAgCGGguGCUCG-CUaCGCGCGGCCg -3'
miRNA:   3'- cuCUaGUC--UGAGCuGGaGCGCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 229018 0.8 0.340214
Target:  5'- cGAGAUCGcGcACUCGGCCUCcCGCAGCg -3'
miRNA:   3'- -CUCUAGU-C-UGAGCUGGAGcGCGUCGg -5'
15670 5' -55.7 NC_004065.1 + 226459 0.66 0.95041
Target:  5'- cGAGAcCGGGCUCG-CCUUcugccaGCGCcGCUg -3'
miRNA:   3'- -CUCUaGUCUGAGCuGGAG------CGCGuCGG- -5'
15670 5' -55.7 NC_004065.1 + 217158 0.68 0.909793
Target:  5'- gGAGcAUCuucuucucuuCUCGcACCUCGCGCcGCCg -3'
miRNA:   3'- -CUC-UAGucu-------GAGC-UGGAGCGCGuCGG- -5'
15670 5' -55.7 NC_004065.1 + 214085 0.66 0.954337
Target:  5'- cGAGAUaCGGuCUCGACCaCGaUGCGGgCg -3'
miRNA:   3'- -CUCUA-GUCuGAGCUGGaGC-GCGUCgG- -5'
15670 5' -55.7 NC_004065.1 + 206549 0.69 0.86406
Target:  5'- --aAUCGGACUCGGCgUCGUcaucgucGCgAGCCg -3'
miRNA:   3'- cucUAGUCUGAGCUGgAGCG-------CG-UCGG- -5'
15670 5' -55.7 NC_004065.1 + 201007 0.73 0.687769
Target:  5'- -cGGUCuGACUCGagGCCgcgugCGCGCGGCg -3'
miRNA:   3'- cuCUAGuCUGAGC--UGGa----GCGCGUCGg -5'
15670 5' -55.7 NC_004065.1 + 199492 0.66 0.955846
Target:  5'- aAGAUCAcGuacgucucuucccacGCggCGGCCgccacgugCGCGCAGCCg -3'
miRNA:   3'- cUCUAGU-C---------------UGa-GCUGGa-------GCGCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 197509 0.67 0.937308
Target:  5'- uAGGUCuccgagGGACcCGGCCgCGCGCGGUa -3'
miRNA:   3'- cUCUAG------UCUGaGCUGGaGCGCGUCGg -5'
15670 5' -55.7 NC_004065.1 + 196983 0.67 0.937308
Target:  5'- gGAGAacagCGGGCgCGACgUCGCGCuGUa -3'
miRNA:   3'- -CUCUa---GUCUGaGCUGgAGCGCGuCGg -5'
15670 5' -55.7 NC_004065.1 + 196339 0.71 0.800334
Target:  5'- gGGGA-CAgauGACUCGcAUCUCGCaGCGGCCc -3'
miRNA:   3'- -CUCUaGU---CUGAGC-UGGAGCG-CGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 195700 0.67 0.92745
Target:  5'- gGAG-UCGGACUCgGACCUguccgacgacggCGaCGCGGCg -3'
miRNA:   3'- -CUCuAGUCUGAG-CUGGA------------GC-GCGUCGg -5'
15670 5' -55.7 NC_004065.1 + 195555 0.76 0.501291
Target:  5'- cAGGUCAGACUCcGCCaUCGCGCcGCa -3'
miRNA:   3'- cUCUAGUCUGAGcUGG-AGCGCGuCGg -5'
15670 5' -55.7 NC_004065.1 + 194999 0.75 0.578561
Target:  5'- --cGUCGGACUCGGCgUCGUacaggaagaaGCGGCCg -3'
miRNA:   3'- cucUAGUCUGAGCUGgAGCG----------CGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 193962 0.69 0.885862
Target:  5'- -uGAUCGcACUCuGCCUCcuCGCGGCCg -3'
miRNA:   3'- cuCUAGUcUGAGcUGGAGc-GCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 172394 0.71 0.764412
Target:  5'- gGAGAUCGuauaacucGACUCcuuguGCCUCG-GCAGCCu -3'
miRNA:   3'- -CUCUAGU--------CUGAGc----UGGAGCgCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 171533 0.67 0.946265
Target:  5'- -cGGUCGGACUCGAaaugaguccauCCguaggCGUcCAGCCu -3'
miRNA:   3'- cuCUAGUCUGAGCU-----------GGa----GCGcGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 164917 0.7 0.849747
Target:  5'- -cGGUCGGA-UCGACCUgggcgaCGCGC-GCCg -3'
miRNA:   3'- cuCUAGUCUgAGCUGGA------GCGCGuCGG- -5'
15670 5' -55.7 NC_004065.1 + 164620 0.67 0.934445
Target:  5'- gGGGAagAGGCUCGcaGCCUCGgaggaacagucggguCGCGGCg -3'
miRNA:   3'- -CUCUagUCUGAGC--UGGAGC---------------GCGUCGg -5'
15670 5' -55.7 NC_004065.1 + 163190 0.71 0.782629
Target:  5'- -cGAUCc-GCgUCGAUCUgGCGCGGCCa -3'
miRNA:   3'- cuCUAGucUG-AGCUGGAgCGCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.