miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15670 5' -55.7 NC_004065.1 + 18301 1.11 0.003626
Target:  5'- cGAGAUCAGACUCGACCUCGCGCAGCCc -3'
miRNA:   3'- -CUCUAGUCUGAGCUGGAGCGCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 124759 0.67 0.92745
Target:  5'- cGAGAacgcgCAGAUgcuggaGAUC-CGCGCGGCCc -3'
miRNA:   3'- -CUCUa----GUCUGag----CUGGaGCGCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 196983 0.67 0.937308
Target:  5'- gGAGAacagCGGGCgCGACgUCGCGCuGUa -3'
miRNA:   3'- -CUCUa---GUCUGaGCUGgAGCGCGuCGg -5'
15670 5' -55.7 NC_004065.1 + 140491 0.66 0.964836
Target:  5'- uGGGAcuaUCGGAUaCGACaUCG-GCGGCCg -3'
miRNA:   3'- -CUCU---AGUCUGaGCUGgAGCgCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 157390 0.72 0.74575
Target:  5'- -cGAUCAauguaucucGACUCGACCUCGUucGCgAGUCg -3'
miRNA:   3'- cuCUAGU---------CUGAGCUGGAGCG--CG-UCGG- -5'
15670 5' -55.7 NC_004065.1 + 163190 0.71 0.782629
Target:  5'- -cGAUCc-GCgUCGAUCUgGCGCGGCCa -3'
miRNA:   3'- cuCUAGucUG-AGCUGGAgCGCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 135646 0.7 0.825791
Target:  5'- cGGGGUCGGGCgCGGCCggCGCGUcaCCg -3'
miRNA:   3'- -CUCUAGUCUGaGCUGGa-GCGCGucGG- -5'
15670 5' -55.7 NC_004065.1 + 164917 0.7 0.849747
Target:  5'- -cGGUCGGA-UCGACCUgggcgaCGCGC-GCCg -3'
miRNA:   3'- cuCUAGUCUgAGCUGGA------GCGCGuCGG- -5'
15670 5' -55.7 NC_004065.1 + 128065 0.69 0.885862
Target:  5'- aAGA-CGGACUgGugCUUGgGCAGCa -3'
miRNA:   3'- cUCUaGUCUGAgCugGAGCgCGUCGg -5'
15670 5' -55.7 NC_004065.1 + 195700 0.67 0.92745
Target:  5'- gGAG-UCGGACUCgGACCUguccgacgacggCGaCGCGGCg -3'
miRNA:   3'- -CUCuAGUCUGAG-CUGGA------------GC-GCGUCGg -5'
15670 5' -55.7 NC_004065.1 + 217158 0.68 0.909793
Target:  5'- gGAGcAUCuucuucucuuCUCGcACCUCGCGCcGCCg -3'
miRNA:   3'- -CUC-UAGucu-------GAGC-UGGAGCGCGuCGG- -5'
15670 5' -55.7 NC_004065.1 + 193962 0.69 0.885862
Target:  5'- -uGAUCGcACUCuGCCUCcuCGCGGCCg -3'
miRNA:   3'- cuCUAGUcUGAGcUGGAGc-GCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 69071 0.85 0.168484
Target:  5'- -cGAcuUCAGcaGCUCGACCUCGCGCAGCg -3'
miRNA:   3'- cuCU--AGUC--UGAGCUGGAGCGCGUCGg -5'
15670 5' -55.7 NC_004065.1 + 69903 0.68 0.922181
Target:  5'- ---uUCAGccACUCGGaUUCGCGCAGCUc -3'
miRNA:   3'- cucuAGUC--UGAGCUgGAGCGCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 124027 0.73 0.697591
Target:  5'- uGGGUCcGACaggCGACCggCGCGCGGCg -3'
miRNA:   3'- cUCUAGuCUGa--GCUGGa-GCGCGUCGg -5'
15670 5' -55.7 NC_004065.1 + 63303 0.69 0.857367
Target:  5'- cAGGUCcgGGAUcgUCG-CCUCGCGC-GCCg -3'
miRNA:   3'- cUCUAG--UCUG--AGCuGGAGCGCGuCGG- -5'
15670 5' -55.7 NC_004065.1 + 29399 0.67 0.92745
Target:  5'- -cGAUUcaGGGCUCGGCUgcccgUCGCGCugggcgaccGGCCu -3'
miRNA:   3'- cuCUAG--UCUGAGCUGG-----AGCGCG---------UCGG- -5'
15670 5' -55.7 NC_004065.1 + 115336 0.67 0.932492
Target:  5'- -uGGUCAGAagagcCGACCgaggccgcguccUCGCGCGcGCCg -3'
miRNA:   3'- cuCUAGUCUga---GCUGG------------AGCGCGU-CGG- -5'
15670 5' -55.7 NC_004065.1 + 122863 0.72 0.726709
Target:  5'- ---cUCGGACUgGgACCUCGUGCuGCCc -3'
miRNA:   3'- cucuAGUCUGAgC-UGGAGCGCGuCGG- -5'
15670 5' -55.7 NC_004065.1 + 59404 0.71 0.800334
Target:  5'- -cGAUCGGACUCucgccgucgucGCCUCGCGCucGCUc -3'
miRNA:   3'- cuCUAGUCUGAGc----------UGGAGCGCGu-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.