miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15671 5' -58.7 NC_004065.1 + 96844 0.66 0.914783
Target:  5'- cCCGGGGAGugcagcgucGccacgcgucgcggcUCGUCGGCGgaCGAGUCc -3'
miRNA:   3'- cGGCCUCUC---------C--------------AGCAGCCGCa-GCUCAG- -5'
15671 5' -58.7 NC_004065.1 + 164638 0.66 0.905127
Target:  5'- cUCGGAGgaacagucGGGUCG-CGGCG-CGcGUCg -3'
miRNA:   3'- cGGCCUC--------UCCAGCaGCCGCaGCuCAG- -5'
15671 5' -58.7 NC_004065.1 + 138433 0.66 0.899166
Target:  5'- cGCCGugcguccucGAGGGGUCGg-GGCGggCGAG-Ca -3'
miRNA:   3'- -CGGC---------CUCUCCAGCagCCGCa-GCUCaG- -5'
15671 5' -58.7 NC_004065.1 + 216872 0.66 0.899166
Target:  5'- aCCGGuuuGAcGGUCGUucgCGGCGgcgCGAGg- -3'
miRNA:   3'- cGGCCu--CU-CCAGCA---GCCGCa--GCUCag -5'
15671 5' -58.7 NC_004065.1 + 61241 0.66 0.899166
Target:  5'- gGgCGGAGAGGaaggCGUCgaaggccugcgcGGCGUCGAc-- -3'
miRNA:   3'- -CgGCCUCUCCa---GCAG------------CCGCAGCUcag -5'
15671 5' -58.7 NC_004065.1 + 31099 0.66 0.899166
Target:  5'- gGCUGGuc--GUCGUCGGCuucGUCGAGg- -3'
miRNA:   3'- -CGGCCucucCAGCAGCCG---CAGCUCag -5'
15671 5' -58.7 NC_004065.1 + 53868 0.66 0.89111
Target:  5'- cGCCGG-GAuGGccacucCGUUGGCGcgacgggaaacaguUCGAGUCg -3'
miRNA:   3'- -CGGCCuCU-CCa-----GCAGCCGC--------------AGCUCAG- -5'
15671 5' -58.7 NC_004065.1 + 98499 0.66 0.88663
Target:  5'- cGCCGucccGAGccGUCGUCGGCacccucgauccUCGAGUCc -3'
miRNA:   3'- -CGGC----CUCucCAGCAGCCGc----------AGCUCAG- -5'
15671 5' -58.7 NC_004065.1 + 75642 0.67 0.882712
Target:  5'- cGCCGGggaggagguggaaguGGAGGUCGgcgaGGCGgccgCGGGc- -3'
miRNA:   3'- -CGGCC---------------UCUCCAGCag--CCGCa---GCUCag -5'
15671 5' -58.7 NC_004065.1 + 201381 0.67 0.876025
Target:  5'- cGCCGG-GGGGUgccaCGUCGacgcacagaugcgucGCGgCGGGUCg -3'
miRNA:   3'- -CGGCCuCUCCA----GCAGC---------------CGCaGCUCAG- -5'
15671 5' -58.7 NC_004065.1 + 228000 0.67 0.866339
Target:  5'- aGCCGGAGAGGUUGUCaccUGUC-AGa- -3'
miRNA:   3'- -CGGCCUCUCCAGCAGcc-GCAGcUCag -5'
15671 5' -58.7 NC_004065.1 + 29445 0.67 0.866339
Target:  5'- uGCCGGGGuAGGUgGcggagaacUUGGCGaUCGAGa- -3'
miRNA:   3'- -CGGCCUC-UCCAgC--------AGCCGC-AGCUCag -5'
15671 5' -58.7 NC_004065.1 + 201881 0.67 0.858471
Target:  5'- aGCCGGucacgcAGAGGcCGaUGGCGUcccagacCGGGUCu -3'
miRNA:   3'- -CGGCC------UCUCCaGCaGCCGCA-------GCUCAG- -5'
15671 5' -58.7 NC_004065.1 + 68656 0.67 0.844366
Target:  5'- gGCC-GAGGcGUacgcgcaGUCGGCGUaCGAGUCg -3'
miRNA:   3'- -CGGcCUCUcCAg------CAGCCGCA-GCUCAG- -5'
15671 5' -58.7 NC_004065.1 + 64206 0.67 0.844366
Target:  5'- gGCgGGcGGAGGcagUGUCGGCGgCGAGg- -3'
miRNA:   3'- -CGgCC-UCUCCa--GCAGCCGCaGCUCag -5'
15671 5' -58.7 NC_004065.1 + 25757 0.68 0.836692
Target:  5'- --aGGAccaGGGuGUCGUCGGCGaccUUGAGUCc -3'
miRNA:   3'- cggCCU---CUC-CAGCAGCCGC---AGCUCAG- -5'
15671 5' -58.7 NC_004065.1 + 174361 0.68 0.828853
Target:  5'- cGCCGGAGGagauGGUgGUaguggugaCGGUGUCGuucauGGUCg -3'
miRNA:   3'- -CGGCCUCU----CCAgCA--------GCCGCAGC-----UCAG- -5'
15671 5' -58.7 NC_004065.1 + 85798 0.68 0.828853
Target:  5'- aGgCGcGAGAaccGG-CGUCGGCGagagucUCGAGUCg -3'
miRNA:   3'- -CgGC-CUCU---CCaGCAGCCGC------AGCUCAG- -5'
15671 5' -58.7 NC_004065.1 + 173560 0.68 0.828853
Target:  5'- cGgCGGGGAGGUCgGUCGaucaCGUCGuuUCg -3'
miRNA:   3'- -CgGCCUCUCCAG-CAGCc---GCAGCucAG- -5'
15671 5' -58.7 NC_004065.1 + 118338 0.68 0.820855
Target:  5'- cGCCGacguccauGG-CGUCGGCGUCGGcGUCu -3'
miRNA:   3'- -CGGCcucu----CCaGCAGCCGCAGCU-CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.