miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15674 3' -52.3 NC_004065.1 + 59149 0.65 0.990188
Target:  5'- -aGGCGACGaCGGCGAGAguccgaucgggcgcGCGGCGAa -3'
miRNA:   3'- ugUCGUUGUcGUCGUUCU--------------CGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 124810 0.66 0.989245
Target:  5'- gACGGCGAaccaGGCGGCcgAGGAGCuguuccaccuGGUGGCg -3'
miRNA:   3'- -UGUCGUUg---UCGUCG--UUCUCG----------UCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 28017 0.66 0.989245
Target:  5'- gACGGCGGC-GCAGCGucucGAugcGCGGCGGg -3'
miRNA:   3'- -UGUCGUUGuCGUCGUu---CU---CGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 202492 0.66 0.989245
Target:  5'- gACAGUca-AGCGG-GAGAGCGGCAc- -3'
miRNA:   3'- -UGUCGuugUCGUCgUUCUCGUCGUug -5'
15674 3' -52.3 NC_004065.1 + 103299 0.66 0.989244
Target:  5'- -aGGCccGCGGCGGCAGGcuCAGCGGu -3'
miRNA:   3'- ugUCGu-UGUCGUCGUUCucGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 90249 0.66 0.989244
Target:  5'- uCGGCGAaGGCccGCGAGAGCAGaguGACc -3'
miRNA:   3'- uGUCGUUgUCGu-CGUUCUCGUCg--UUG- -5'
15674 3' -52.3 NC_004065.1 + 133630 0.66 0.989244
Target:  5'- -gAGCGcaaaacACAGCAGCAcuccCAGCAGCa -3'
miRNA:   3'- ugUCGU------UGUCGUCGUucucGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 30149 0.66 0.989104
Target:  5'- -gAGCGACcggacccAGCcGCGGGAuGUAGCGGCu -3'
miRNA:   3'- ugUCGUUG-------UCGuCGUUCU-CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 60719 0.66 0.987776
Target:  5'- -gGGC-GCGGCAGuCGAGAGCuccGuCGACg -3'
miRNA:   3'- ugUCGuUGUCGUC-GUUCUCGu--C-GUUG- -5'
15674 3' -52.3 NC_004065.1 + 87784 0.66 0.987776
Target:  5'- -aAGCccuGCAGCAGCAucuccauguagAGGGuCAGCAc- -3'
miRNA:   3'- ugUCGu--UGUCGUCGU-----------UCUC-GUCGUug -5'
15674 3' -52.3 NC_004065.1 + 25680 0.66 0.987776
Target:  5'- cCGGCGA-GGCGGCGAG-GUAGUAGa -3'
miRNA:   3'- uGUCGUUgUCGUCGUUCuCGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 192184 0.66 0.987776
Target:  5'- gAUAGUAGgGGUAGCuuuuGAGCGGUucuuGCg -3'
miRNA:   3'- -UGUCGUUgUCGUCGuu--CUCGUCGu---UG- -5'
15674 3' -52.3 NC_004065.1 + 99127 0.66 0.987776
Target:  5'- gACGGCAacGCAGguGCGGccgacGGCGGUAAa -3'
miRNA:   3'- -UGUCGU--UGUCguCGUUc----UCGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 211342 0.66 0.987776
Target:  5'- gACGGCgGGCAGCAGCuauauGGA-CGGCGc- -3'
miRNA:   3'- -UGUCG-UUGUCGUCGu----UCUcGUCGUug -5'
15674 3' -52.3 NC_004065.1 + 58431 0.66 0.986823
Target:  5'- aACAGCAACaacuaccagaacuccAGCAGCuccgcCGGCGACg -3'
miRNA:   3'- -UGUCGUUG---------------UCGUCGuucucGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 194116 0.66 0.986823
Target:  5'- cCAGCGGCGcugugucagccgcucGCGGgGGGGcgcGCAGCAACc -3'
miRNA:   3'- uGUCGUUGU---------------CGUCgUUCU---CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 75482 0.66 0.986156
Target:  5'- -gGGCGaugGCGGCGGCGAGGaucagggcGCAGUGAa -3'
miRNA:   3'- ugUCGU---UGUCGUCGUUCU--------CGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 126560 0.66 0.986156
Target:  5'- -aAGC-ACGGgGGCGcguGGcGCAGCAGCa -3'
miRNA:   3'- ugUCGuUGUCgUCGU---UCuCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 39313 0.66 0.986156
Target:  5'- cACAGCAACAGCAGCAgaaAGAa------- -3'
miRNA:   3'- -UGUCGUUGUCGUCGU---UCUcgucguug -5'
15674 3' -52.3 NC_004065.1 + 63776 0.66 0.986156
Target:  5'- cGCGGCGaucuACGGCcGCGAGGGCgaGGCc-- -3'
miRNA:   3'- -UGUCGU----UGUCGuCGUUCUCG--UCGuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.