miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15674 3' -52.3 NC_004065.1 + 20219 1.1 0.005538
Target:  5'- aACAGCAACAGCAGCAAGAGCAGCAACa -3'
miRNA:   3'- -UGUCGUUGUCGUCGUUCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 24852 0.78 0.525447
Target:  5'- aACAcCGGCGGCGGCGGuGGCGGCGACg -3'
miRNA:   3'- -UGUcGUUGUCGUCGUUcUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 62864 0.77 0.545857
Target:  5'- cGCGGCuGCuGCcgccGGCGGGGGCGGCGGCg -3'
miRNA:   3'- -UGUCGuUGuCG----UCGUUCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 28017 0.66 0.989245
Target:  5'- gACGGCGGC-GCAGCGucucGAugcGCGGCGGg -3'
miRNA:   3'- -UGUCGUUGuCGUCGUu---CU---CGUCGUUg -5'
15674 3' -52.3 NC_004065.1 + 36636 0.87 0.17172
Target:  5'- -uGGCGGCGGCAGCGAGAGCgacgauAGCGACg -3'
miRNA:   3'- ugUCGUUGUCGUCGUUCUCG------UCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 73978 0.86 0.190455
Target:  5'- gGCGGCAGCAGUGGCGccAGCAGCGGCg -3'
miRNA:   3'- -UGUCGUUGUCGUCGUucUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 19236 0.82 0.330631
Target:  5'- gACAGCAgggacaGCAGCAGCAcagccaccacacccaGGuGCAGCAGCa -3'
miRNA:   3'- -UGUCGU------UGUCGUCGU---------------UCuCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 164951 0.81 0.384292
Target:  5'- cCGGCGGCGGCGGCGGcAGCAGCuGCg -3'
miRNA:   3'- uGUCGUUGUCGUCGUUcUCGUCGuUG- -5'
15674 3' -52.3 NC_004065.1 + 45462 0.78 0.505332
Target:  5'- aACGGUGGCGGUGGCGGcAGCGGCGGCg -3'
miRNA:   3'- -UGUCGUUGUCGUCGUUcUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 113963 0.78 0.525447
Target:  5'- uCGGCGuCGGCGGCGGcAGCGGCGACg -3'
miRNA:   3'- uGUCGUuGUCGUCGUUcUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 73936 0.78 0.50933
Target:  5'- aGCGGCGGCAGCAGCAagaaagaagaggaaaGGAGgaAGCAAUu -3'
miRNA:   3'- -UGUCGUUGUCGUCGU---------------UCUCg-UCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 97222 0.78 0.485556
Target:  5'- gACGGcCGGC-GCAGCAGGcGCGGCAGCa -3'
miRNA:   3'- -UGUC-GUUGuCGUCGUUCuCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 149475 1.04 0.013795
Target:  5'- gGCGGCGGCGGCAGCGGGAGCAGCGACa -3'
miRNA:   3'- -UGUCGUUGUCGUCGUUCUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 99421 0.78 0.51535
Target:  5'- aGguGCAGCAGCAGCuGGAgGCGGCcACg -3'
miRNA:   3'- -UguCGUUGUCGUCGuUCU-CGUCGuUG- -5'
15674 3' -52.3 NC_004065.1 + 97258 0.9 0.115369
Target:  5'- aGCAGCAGCGGCAGC-AGAcgucGCAGCAGCg -3'
miRNA:   3'- -UGUCGUUGUCGUCGuUCU----CGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 169814 0.79 0.475807
Target:  5'- aGCGGCAACAGCGcGCAGaaaccGAGaCGGCGGCg -3'
miRNA:   3'- -UGUCGUUGUCGU-CGUU-----CUC-GUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 97339 0.78 0.51535
Target:  5'- cGCGGagaCAGCAGCAGCAccAGCAGCAAUc -3'
miRNA:   3'- -UGUC---GUUGUCGUCGUucUCGUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 127887 0.77 0.545857
Target:  5'- cGCcGCAGCGGCAGCGcGAGCGGUGcACg -3'
miRNA:   3'- -UGuCGUUGUCGUCGUuCUCGUCGU-UG- -5'
15674 3' -52.3 NC_004065.1 + 52223 0.87 0.1673
Target:  5'- aACAGCAggaacaACAGCAGCAGGAGaAGCAACa -3'
miRNA:   3'- -UGUCGU------UGUCGUCGUUCUCgUCGUUG- -5'
15674 3' -52.3 NC_004065.1 + 128737 0.85 0.22191
Target:  5'- gGCAGCAGCAGCGGCGcuGGCAGUggUa -3'
miRNA:   3'- -UGUCGUUGUCGUCGUucUCGUCGuuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.