miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16250 3' -56 NC_004084.1 + 911 0.66 0.773191
Target:  5'- gCGUCGUCg-GAGUUCgCUgCGGCCu-- -3'
miRNA:   3'- gGCAGUAGagCUCAAG-GA-GCCGGccc -5'
16250 3' -56 NC_004084.1 + 3100 0.66 0.773191
Target:  5'- aCCGUCG-CU-GAGUUCCUCGaugagaGGGa -3'
miRNA:   3'- -GGCAGUaGAgCUCAAGGAGCcgg---CCC- -5'
16250 3' -56 NC_004084.1 + 21552 0.66 0.773191
Target:  5'- uCCGUCggCUUGAG-UCCacgCuGCCGGa -3'
miRNA:   3'- -GGCAGuaGAGCUCaAGGa--GcCGGCCc -5'
16250 3' -56 NC_004084.1 + 48243 0.66 0.773191
Target:  5'- aCGUCGaggacugggauUC-CGAGaaCCUCGaGCCGGa -3'
miRNA:   3'- gGCAGU-----------AGaGCUCaaGGAGC-CGGCCc -5'
16250 3' -56 NC_004084.1 + 38191 0.66 0.76338
Target:  5'- gCGUCAUCUCGAaugacgucgacGUg-CUUGcGCCGGa -3'
miRNA:   3'- gGCAGUAGAGCU-----------CAagGAGC-CGGCCc -5'
16250 3' -56 NC_004084.1 + 41948 0.66 0.76338
Target:  5'- gUCGUC-UCUCGAGgcCCU--GCCGGa -3'
miRNA:   3'- -GGCAGuAGAGCUCaaGGAgcCGGCCc -5'
16250 3' -56 NC_004084.1 + 1999 0.66 0.753444
Target:  5'- aCGUCGUCgaggacgcgaUCGAGUUCgaCUCccaGCUGGGc -3'
miRNA:   3'- gGCAGUAG----------AGCUCAAG--GAGc--CGGCCC- -5'
16250 3' -56 NC_004084.1 + 52626 0.66 0.753444
Target:  5'- cCCGgCGUCggauaccagggUGAGUgCCUCGGCUGcGGc -3'
miRNA:   3'- -GGCaGUAGa----------GCUCAaGGAGCCGGC-CC- -5'
16250 3' -56 NC_004084.1 + 35877 0.66 0.753444
Target:  5'- aCCG-CGUgaUCGGucgUCUUCGGCCGGa -3'
miRNA:   3'- -GGCaGUAg-AGCUca-AGGAGCCGGCCc -5'
16250 3' -56 NC_004084.1 + 10704 0.66 0.743391
Target:  5'- gCCGgug-CUCG-GUUCuucgCUCGGCuCGGGg -3'
miRNA:   3'- -GGCaguaGAGCuCAAG----GAGCCG-GCCC- -5'
16250 3' -56 NC_004084.1 + 43735 0.66 0.743391
Target:  5'- -aGUUGggccaaUCGAGgaCC-CGGCCGGGa -3'
miRNA:   3'- ggCAGUag----AGCUCaaGGaGCCGGCCC- -5'
16250 3' -56 NC_004084.1 + 21147 0.66 0.74238
Target:  5'- aCGUCcuggauuGUCgagagCGAG-UCCUCGacgagcGCCGGGa -3'
miRNA:   3'- gGCAG-------UAGa----GCUCaAGGAGC------CGGCCC- -5'
16250 3' -56 NC_004084.1 + 52686 0.67 0.712644
Target:  5'- gCGaUCAUCccgaUCGAGgaCCUCGGCCc-- -3'
miRNA:   3'- gGC-AGUAG----AGCUCaaGGAGCCGGccc -5'
16250 3' -56 NC_004084.1 + 55360 0.67 0.712644
Target:  5'- cCCGUCGa--CGAGUUCCUCGa--GGGu -3'
miRNA:   3'- -GGCAGUagaGCUCAAGGAGCcggCCC- -5'
16250 3' -56 NC_004084.1 + 54930 0.67 0.702232
Target:  5'- gCCGUCucgaUCGGGaUCCUCcGCCucGGGa -3'
miRNA:   3'- -GGCAGuag-AGCUCaAGGAGcCGG--CCC- -5'
16250 3' -56 NC_004084.1 + 50955 0.67 0.691757
Target:  5'- gCCGUCGccgCUCGAGUcgCCgUCGGacuCCGaGGu -3'
miRNA:   3'- -GGCAGUa--GAGCUCAa-GG-AGCC---GGC-CC- -5'
16250 3' -56 NC_004084.1 + 14658 0.67 0.691757
Target:  5'- cCCaGUCGaugCccgCGAGcgUCC-CGGCCGGGu -3'
miRNA:   3'- -GG-CAGUa--Ga--GCUCa-AGGaGCCGGCCC- -5'
16250 3' -56 NC_004084.1 + 35187 0.67 0.691757
Target:  5'- uCCGggCcgCUCGAGcUCCUCcgaaucGUCGGGa -3'
miRNA:   3'- -GGCa-GuaGAGCUCaAGGAGc-----CGGCCC- -5'
16250 3' -56 NC_004084.1 + 35263 0.67 0.691757
Target:  5'- uCCGUCc---CGAGggggaagUCCUCGGCgcUGGGg -3'
miRNA:   3'- -GGCAGuagaGCUCa------AGGAGCCG--GCCC- -5'
16250 3' -56 NC_004084.1 + 35668 0.67 0.681228
Target:  5'- aCCGUC-UCgUCGAugUCCUCGuaccGCUGGGc -3'
miRNA:   3'- -GGCAGuAG-AGCUcaAGGAGC----CGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.