miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16253 3' -56.4 NC_004084.1 + 30027 0.66 0.715444
Target:  5'- --gCGCCGAUCGAggucucgcgGgGGCCGCUcgCg -3'
miRNA:   3'- ccaGUGGCUAGCU---------CgUCGGCGGuaGg -5'
16253 3' -56.4 NC_004084.1 + 36832 0.66 0.715444
Target:  5'- --aCGCCGAUCGAaCgAGCCGCgAaacggaugcUCCg -3'
miRNA:   3'- ccaGUGGCUAGCUcG-UCGGCGgU---------AGG- -5'
16253 3' -56.4 NC_004084.1 + 4834 0.66 0.715444
Target:  5'- -cUCGCCGAUCGucGCgAGCa--CAUCCg -3'
miRNA:   3'- ccAGUGGCUAGCu-CG-UCGgcgGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 21059 0.66 0.715444
Target:  5'- cGGcCACCGcagugcuUCGAGCuGGgCGUCGUCg -3'
miRNA:   3'- -CCaGUGGCu------AGCUCG-UCgGCGGUAGg -5'
16253 3' -56.4 NC_004084.1 + 15827 0.66 0.714397
Target:  5'- cGGcUC-CUGGUCGuuguagcacgaguGGCAGCuCGCCccAUCCa -3'
miRNA:   3'- -CC-AGuGGCUAGC-------------UCGUCG-GCGG--UAGG- -5'
16253 3' -56.4 NC_004084.1 + 17830 0.66 0.704935
Target:  5'- aGGUCcgagaaGCCGAgcUCGAGaCGGCCGagaUGUCg -3'
miRNA:   3'- -CCAG------UGGCU--AGCUC-GUCGGCg--GUAGg -5'
16253 3' -56.4 NC_004084.1 + 11046 0.66 0.704935
Target:  5'- cGUCGacgacgcggaCGAagGGGCGGCCGCCGa-- -3'
miRNA:   3'- cCAGUg---------GCUagCUCGUCGGCGGUagg -5'
16253 3' -56.4 NC_004084.1 + 51157 0.66 0.704935
Target:  5'- aGGagG-CGAUCGAGaCGGUCGCCGagCa -3'
miRNA:   3'- -CCagUgGCUAGCUC-GUCGGCGGUagG- -5'
16253 3' -56.4 NC_004084.1 + 46874 0.66 0.694358
Target:  5'- cGUUugCG-UCG-GCuGCCGCCAcgCCc -3'
miRNA:   3'- cCAGugGCuAGCuCGuCGGCGGUa-GG- -5'
16253 3' -56.4 NC_004084.1 + 10670 0.66 0.694358
Target:  5'- cGUUugCGAUCGccgGGCAGC-GaCCGUUCg -3'
miRNA:   3'- cCAGugGCUAGC---UCGUCGgC-GGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 14870 0.66 0.683723
Target:  5'- cGGcCGCCGGUCucGguGCCGUgcuuCGUCa -3'
miRNA:   3'- -CCaGUGGCUAGcuCguCGGCG----GUAGg -5'
16253 3' -56.4 NC_004084.1 + 54567 0.67 0.662322
Target:  5'- uGGaCACCGAgguucCGGuGgAGCCGUCGUCg -3'
miRNA:   3'- -CCaGUGGCUa----GCU-CgUCGGCGGUAGg -5'
16253 3' -56.4 NC_004084.1 + 16124 0.67 0.640813
Target:  5'- cGUCGCCGAUCGugaacGGguGaCCGCgGUg- -3'
miRNA:   3'- cCAGUGGCUAGC-----UCguC-GGCGgUAgg -5'
16253 3' -56.4 NC_004084.1 + 10905 0.67 0.640813
Target:  5'- gGGUacucCCGAUCGGGgAGuUCGUCGUCUu -3'
miRNA:   3'- -CCAgu--GGCUAGCUCgUC-GGCGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 51215 0.67 0.640813
Target:  5'- gGGcUACUGGgcguggugcgUCGAGCAGCuCGaCGUCCg -3'
miRNA:   3'- -CCaGUGGCU----------AGCUCGUCG-GCgGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 39077 0.67 0.638659
Target:  5'- aGGUCGCUGucgcgcuugagUGAGaCAGUCGCCcgUCg -3'
miRNA:   3'- -CCAGUGGCua---------GCUC-GUCGGCGGuaGG- -5'
16253 3' -56.4 NC_004084.1 + 16621 0.67 0.631119
Target:  5'- cGGUCuguggaagACCGAUCuuuucggggcggguGAcGCAGCCGCUggagugcuugguagaAUCCg -3'
miRNA:   3'- -CCAG--------UGGCUAG--------------CU-CGUCGGCGG---------------UAGG- -5'
16253 3' -56.4 NC_004084.1 + 49455 0.67 0.619274
Target:  5'- cGUCGCCGccGUCuucGUcGCCGCUGUCCu -3'
miRNA:   3'- cCAGUGGC--UAGcu-CGuCGGCGGUAGG- -5'
16253 3' -56.4 NC_004084.1 + 20202 0.67 0.619274
Target:  5'- aGUCGCCGcAUCGAacgacagcGCGGCCGUUuuggaccucUCCg -3'
miRNA:   3'- cCAGUGGC-UAGCU--------CGUCGGCGGu--------AGG- -5'
16253 3' -56.4 NC_004084.1 + 42259 0.67 0.619274
Target:  5'- uGGUCGagUGAugcUCGAGCAGCgCGaCCA-CCg -3'
miRNA:   3'- -CCAGUg-GCU---AGCUCGUCG-GC-GGUaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.