miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16259 3' -55.4 NC_004084.1 + 16388 0.66 0.787799
Target:  5'- gACGAUGUCgaccgCCUCGcUCGcga-CGGCCa -3'
miRNA:   3'- -UGCUGCGGa----GGAGC-AGCuaagGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 10387 0.66 0.787799
Target:  5'- uCGACGUCgagCUCGUCGucgUCCaggucgucGACCa -3'
miRNA:   3'- uGCUGCGGag-GAGCAGCua-AGG--------CUGG- -5'
16259 3' -55.4 NC_004084.1 + 3180 0.66 0.778098
Target:  5'- -gGAUcaCCUUgUCGUCGGUUCCGAg- -3'
miRNA:   3'- ugCUGc-GGAGgAGCAGCUAAGGCUgg -5'
16259 3' -55.4 NC_004084.1 + 17332 0.66 0.778098
Target:  5'- gGCGACgGCCcgcaucgUCUCGUCGAcguacucgCgGACCg -3'
miRNA:   3'- -UGCUG-CGGa------GGAGCAGCUaa------GgCUGG- -5'
16259 3' -55.4 NC_004084.1 + 48525 0.66 0.778098
Target:  5'- gACGuACGCCUUCaCGucaUCGGUcgCCGACUc -3'
miRNA:   3'- -UGC-UGCGGAGGaGC---AGCUAa-GGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 28135 0.66 0.778098
Target:  5'- aAUGACGuCCUCgUC-UCGAUacUUCGGCUg -3'
miRNA:   3'- -UGCUGC-GGAGgAGcAGCUA--AGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 39612 0.66 0.77712
Target:  5'- gACGugGCCggcgacgUCCUCGaCGAgu-CGAUCg -3'
miRNA:   3'- -UGCugCGG-------AGGAGCaGCUaagGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 36641 0.66 0.768253
Target:  5'- gUGACgGCC-CCgaCGUCGAUgccgCCGAUCc -3'
miRNA:   3'- uGCUG-CGGaGGa-GCAGCUAa---GGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 811 0.66 0.768253
Target:  5'- gGCGAuCGUggaggUCCUCGUCGAUgCUGAUg -3'
miRNA:   3'- -UGCU-GCGg----AGGAGCAGCUAaGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 37038 0.66 0.768253
Target:  5'- uCGcCGCCUCacggUCGUCGAUgUCGAUg -3'
miRNA:   3'- uGCuGCGGAGg---AGCAGCUAaGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 27647 0.66 0.768253
Target:  5'- cGCGuACGCCUCgaggaggUCGcUCGAcUCCGGuCCg -3'
miRNA:   3'- -UGC-UGCGGAGg------AGC-AGCUaAGGCU-GG- -5'
16259 3' -55.4 NC_004084.1 + 16146 0.66 0.758274
Target:  5'- gACGAacUGCg-CgUCGUCGcgUCCGAUCu -3'
miRNA:   3'- -UGCU--GCGgaGgAGCAGCuaAGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 22156 0.66 0.758274
Target:  5'- cGCGAgCGCCUCggcgcaCUCGagGAcgUCGACCc -3'
miRNA:   3'- -UGCU-GCGGAG------GAGCagCUaaGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 52795 0.66 0.758274
Target:  5'- aGCGGCuGCUUCagga--GGUUCCGACCg -3'
miRNA:   3'- -UGCUG-CGGAGgagcagCUAAGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 50551 0.66 0.758274
Target:  5'- aGCGGaGUCUCCUCGaUCaugUCCGuCCa -3'
miRNA:   3'- -UGCUgCGGAGGAGC-AGcuaAGGCuGG- -5'
16259 3' -55.4 NC_004084.1 + 43264 0.66 0.748171
Target:  5'- cCGACGUucaCUCCUCG-CGAUggCUGuACCc -3'
miRNA:   3'- uGCUGCG---GAGGAGCaGCUAa-GGC-UGG- -5'
16259 3' -55.4 NC_004084.1 + 54800 0.66 0.748171
Target:  5'- cCGAuCGCCUCgUaGUCGG-UCCaGGCCg -3'
miRNA:   3'- uGCU-GCGGAGgAgCAGCUaAGG-CUGG- -5'
16259 3' -55.4 NC_004084.1 + 35370 0.66 0.748171
Target:  5'- aACGACGCCacugCCgucagUGUCGAagcUCCaGAUCa -3'
miRNA:   3'- -UGCUGCGGa---GGa----GCAGCUa--AGG-CUGG- -5'
16259 3' -55.4 NC_004084.1 + 32222 0.66 0.748171
Target:  5'- -aGAUG-CUCCUCGaCGAcgCCGACg -3'
miRNA:   3'- ugCUGCgGAGGAGCaGCUaaGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 39525 0.66 0.748171
Target:  5'- cGCGACGUccucgaggauCUCCUCGUgauggccagcgCGAUcgacUCGACCg -3'
miRNA:   3'- -UGCUGCG----------GAGGAGCA-----------GCUAa---GGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.