Results 1 - 20 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16259 | 3' | -55.4 | NC_004084.1 | + | 811 | 0.66 | 0.768253 |
Target: 5'- gGCGAuCGUggaggUCCUCGUCGAUgCUGAUg -3' miRNA: 3'- -UGCU-GCGg----AGGAGCAGCUAaGGCUGg -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 1619 | 0.73 | 0.390573 |
Target: 5'- uCGAUGaaCUCCUCGagGAggCCGACCg -3' miRNA: 3'- uGCUGCg-GAGGAGCagCUaaGGCUGG- -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 1871 | 0.71 | 0.466173 |
Target: 5'- gACGuCGCCUCCUggacugccacgccaaGUCGGggauggggCCGACCg -3' miRNA: 3'- -UGCuGCGGAGGAg--------------CAGCUaa------GGCUGG- -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 1973 | 0.68 | 0.66419 |
Target: 5'- aGCG-CGCCgUCgagaUCGUCG-UUCCGACg -3' miRNA: 3'- -UGCuGCGG-AGg---AGCAGCuAAGGCUGg -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 2659 | 0.66 | 0.748171 |
Target: 5'- gUGACGCCUCgUaacCGAUUCCcuggugguucGACCg -3' miRNA: 3'- uGCUGCGGAGgAgcaGCUAAGG----------CUGG- -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 3074 | 0.67 | 0.70674 |
Target: 5'- uCGACggGCCg-CUCGUCGAcgugcgUUCCGGCg -3' miRNA: 3'- uGCUG--CGGagGAGCAGCU------AAGGCUGg -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 3180 | 0.66 | 0.778098 |
Target: 5'- -gGAUcaCCUUgUCGUCGGUUCCGAg- -3' miRNA: 3'- ugCUGc-GGAGgAGCAGCUAAGGCUgg -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 3812 | 0.72 | 0.445826 |
Target: 5'- aACGGCGaCCucgauccagUCUUCGUCGAcgCCGACg -3' miRNA: 3'- -UGCUGC-GG---------AGGAGCAGCUaaGGCUGg -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 4180 | 0.72 | 0.417643 |
Target: 5'- gACGGCGCugaucgCUCCgaCGUCGAgaUCCGACUc -3' miRNA: 3'- -UGCUGCG------GAGGa-GCAGCUa-AGGCUGG- -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 4247 | 0.68 | 0.66419 |
Target: 5'- gACGugGUCgCCUCGUUGcUUCUcGCCc -3' miRNA: 3'- -UGCugCGGaGGAGCAGCuAAGGcUGG- -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 4356 | 0.69 | 0.578306 |
Target: 5'- uCGccCGUCUCCUCGUCGcgcgUCCaACCg -3' miRNA: 3'- uGCu-GCGGAGGAGCAGCua--AGGcUGG- -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 5478 | 0.68 | 0.621177 |
Target: 5'- gACGACGCCgacggCCagaUCGUCGcagUCGACg -3' miRNA: 3'- -UGCUGCGGa----GG---AGCAGCuaaGGCUGg -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 7272 | 0.71 | 0.455454 |
Target: 5'- uCGAuCGCCUCCUCGuUCGGgaUCGcCCa -3' miRNA: 3'- uGCU-GCGGAGGAGC-AGCUaaGGCuGG- -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 8728 | 0.68 | 0.642702 |
Target: 5'- uCGGCGUCacCCUCGUgGAUgucgCCGGuCCa -3' miRNA: 3'- uGCUGCGGa-GGAGCAgCUAa---GGCU-GG- -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 9500 | 0.71 | 0.455454 |
Target: 5'- cCGGCGCCgaCCggaaGUCGuggCCGACCg -3' miRNA: 3'- uGCUGCGGa-GGag--CAGCuaaGGCUGG- -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 10123 | 0.72 | 0.425985 |
Target: 5'- uCGACGCaCUCCggguuccgcaguUCGUCGGUucccuccUCCGGCUc -3' miRNA: 3'- uGCUGCG-GAGG------------AGCAGCUA-------AGGCUGG- -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 10387 | 0.66 | 0.787799 |
Target: 5'- uCGACGUCgagCUCGUCGucgUCCaggucgucGACCa -3' miRNA: 3'- uGCUGCGGag-GAGCAGCua-AGG--------CUGG- -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 11854 | 0.67 | 0.696181 |
Target: 5'- cGCGAUGCCga--UGcCGAgUCCGACCa -3' miRNA: 3'- -UGCUGCGGaggaGCaGCUaAGGCUGG- -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 12026 | 0.69 | 0.599688 |
Target: 5'- cCGuCGCCga-UCGUCGAUU-CGACCu -3' miRNA: 3'- uGCuGCGGaggAGCAGCUAAgGCUGG- -5' |
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16259 | 3' | -55.4 | NC_004084.1 | + | 12373 | 0.67 | 0.696181 |
Target: 5'- gAUGACGUCUCCUUGcUCGAacUCGugUu -3' miRNA: 3'- -UGCUGCGGAGGAGC-AGCUaaGGCugG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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