miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16271 5' -54.5 NC_004084.1 + 29566 0.66 0.784846
Target:  5'- -gCC-GUUGAGgGCcAUCGCCGGGUGg -3'
miRNA:   3'- agGGuCAGCUUgUGcUAGCGGCCUAU- -5'
16271 5' -54.5 NC_004084.1 + 26802 0.66 0.774875
Target:  5'- cUCCCAGagcgaaUCGAGCGCGAga-UCGGAg- -3'
miRNA:   3'- -AGGGUC------AGCUUGUGCUagcGGCCUau -5'
16271 5' -54.5 NC_004084.1 + 16104 0.66 0.773869
Target:  5'- gUCCCgacGGUCGu-CGCGAUCGUcgccgaucgugaaCGGGUGa -3'
miRNA:   3'- -AGGG---UCAGCuuGUGCUAGCG-------------GCCUAU- -5'
16271 5' -54.5 NC_004084.1 + 24013 0.66 0.764756
Target:  5'- cUCCCAGacggCGAuggACGCGGUUGCgGGc-- -3'
miRNA:   3'- -AGGGUCa---GCU---UGUGCUAGCGgCCuau -5'
16271 5' -54.5 NC_004084.1 + 43472 0.66 0.764756
Target:  5'- gUCCCGGaCGAGCAUcuUCaCCGGAUc -3'
miRNA:   3'- -AGGGUCaGCUUGUGcuAGcGGCCUAu -5'
16271 5' -54.5 NC_004084.1 + 35469 0.66 0.764756
Target:  5'- aCCaggagcaGGUCGAGgcgGCGAUCGCCGaGAUc -3'
miRNA:   3'- aGGg------UCAGCUUg--UGCUAGCGGC-CUAu -5'
16271 5' -54.5 NC_004084.1 + 18862 0.66 0.744121
Target:  5'- gUCCCGGUCGAgu-CGAUCGCgcUGGc-- -3'
miRNA:   3'- -AGGGUCAGCUuguGCUAGCG--GCCuau -5'
16271 5' -54.5 NC_004084.1 + 2660 0.66 0.744121
Target:  5'- gUCCAGUCGAGCuCGuucgaGCCGGu-- -3'
miRNA:   3'- aGGGUCAGCUUGuGCuag--CGGCCuau -5'
16271 5' -54.5 NC_004084.1 + 57451 0.67 0.733628
Target:  5'- gUCCCGGUggcacagcaGGAUGCGGUCcCCGGAg- -3'
miRNA:   3'- -AGGGUCAg--------CUUGUGCUAGcGGCCUau -5'
16271 5' -54.5 NC_004084.1 + 57116 0.67 0.733628
Target:  5'- aUCCAGUCGAGgACGuccucgguGUCGCCGu--- -3'
miRNA:   3'- aGGGUCAGCUUgUGC--------UAGCGGCcuau -5'
16271 5' -54.5 NC_004084.1 + 8546 0.67 0.733628
Target:  5'- aCCCAucGUCccGCAgGAcUCGCCGGAUc -3'
miRNA:   3'- aGGGU--CAGcuUGUgCU-AGCGGCCUAu -5'
16271 5' -54.5 NC_004084.1 + 9392 0.67 0.732573
Target:  5'- gUCCCGuccaggacgucguGUCGGuCACGAUCGacaCGGAc- -3'
miRNA:   3'- -AGGGU-------------CAGCUuGUGCUAGCg--GCCUau -5'
16271 5' -54.5 NC_004084.1 + 29074 0.67 0.723033
Target:  5'- gCCCGcUCGGGgGCGucGUCGCCGcGGUAg -3'
miRNA:   3'- aGGGUcAGCUUgUGC--UAGCGGC-CUAU- -5'
16271 5' -54.5 NC_004084.1 + 10661 0.67 0.712348
Target:  5'- gCCgAGUgcCGuuUGCGAUCGCCGGGc- -3'
miRNA:   3'- aGGgUCA--GCuuGUGCUAGCGGCCUau -5'
16271 5' -54.5 NC_004084.1 + 6421 0.68 0.684224
Target:  5'- cUCCCAGucccgcggcuucaguUCGAACGCccacuGGUCGCCGuGGa- -3'
miRNA:   3'- -AGGGUC---------------AGCUUGUG-----CUAGCGGC-CUau -5'
16271 5' -54.5 NC_004084.1 + 46339 0.68 0.679862
Target:  5'- gCCgAGUCGuACgACGAUaUGCCGGAg- -3'
miRNA:   3'- aGGgUCAGCuUG-UGCUA-GCGGCCUau -5'
16271 5' -54.5 NC_004084.1 + 8371 0.68 0.679862
Target:  5'- aCCCGGUgagggaCGAGCAucuuCGAcuuUCGUCGGAUGu -3'
miRNA:   3'- aGGGUCA------GCUUGU----GCU---AGCGGCCUAU- -5'
16271 5' -54.5 NC_004084.1 + 46677 0.68 0.668928
Target:  5'- gCCaCAGuccgcgauUCGAGCACG-UCGCCGGcgAc -3'
miRNA:   3'- aGG-GUC--------AGCUUGUGCuAGCGGCCuaU- -5'
16271 5' -54.5 NC_004084.1 + 5086 0.68 0.66235
Target:  5'- gUCCaccUCGAAgacgugaaccgagccCGCGAUCGCCGGGUc -3'
miRNA:   3'- -AGGgucAGCUU---------------GUGCUAGCGGCCUAu -5'
16271 5' -54.5 NC_004084.1 + 17696 0.68 0.657959
Target:  5'- -gCCAGUCGAcCACGAUCcaGCCuGAg- -3'
miRNA:   3'- agGGUCAGCUuGUGCUAG--CGGcCUau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.