miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16274 5' -52.9 NC_004084.1 + 58128 0.84 0.10336
Target:  5'- cGUCGGCGGUCGUCGUCGaGcCGCCGUg -3'
miRNA:   3'- -CAGCUGCUAGUAGUAGUcCaGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 58075 0.78 0.268313
Target:  5'- uUCGACGG-CGUUGUCGuugccguccuGGUCGCCGCg -3'
miRNA:   3'- cAGCUGCUaGUAGUAGU----------CCAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 58041 0.66 0.866544
Target:  5'- -gCGGCGA-CGUCccCGGGcUCGCgGCa -3'
miRNA:   3'- caGCUGCUaGUAGuaGUCC-AGCGgCG- -5'
16274 5' -52.9 NC_004084.1 + 57120 0.74 0.405927
Target:  5'- aGUCGAgGA-CGUCcUCGGuGUCGCCGUc -3'
miRNA:   3'- -CAGCUgCUaGUAGuAGUC-CAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 56734 0.68 0.784896
Target:  5'- --gGACGuccuucgCGUCgAUCAGGUCGCC-Cg -3'
miRNA:   3'- cagCUGCua-----GUAG-UAGUCCAGCGGcG- -5'
16274 5' -52.9 NC_004084.1 + 55382 0.66 0.838589
Target:  5'- -gUGGCGAUCAUCGccguauucgccacgUCGGGgaCGCUGUc -3'
miRNA:   3'- caGCUGCUAGUAGU--------------AGUCCa-GCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 55254 0.66 0.858343
Target:  5'- cGUCGACGA-CGUCuac-GGUCgGCgGCg -3'
miRNA:   3'- -CAGCUGCUaGUAGuaguCCAG-CGgCG- -5'
16274 5' -52.9 NC_004084.1 + 54600 0.72 0.536856
Target:  5'- cGUCGACGAagAcuggAUCgAGGUCGCCGUu -3'
miRNA:   3'- -CAGCUGCUagUag--UAG-UCCAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 54485 0.66 0.858343
Target:  5'- -aCGGCGGggAUgaUGUCGGGUgCGCCGUa -3'
miRNA:   3'- caGCUGCUagUA--GUAGUCCA-GCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 54104 0.69 0.679448
Target:  5'- cUCGcaggaGGUCAcUCGcCAGGUCGCCGUc -3'
miRNA:   3'- cAGCug---CUAGU-AGUaGUCCAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 53959 0.66 0.841234
Target:  5'- cUCGAacuCGAUCGUCcaGUCGGGcgCGUCGa -3'
miRNA:   3'- cAGCU---GCUAGUAG--UAGUCCa-GCGGCg -5'
16274 5' -52.9 NC_004084.1 + 53716 0.68 0.733455
Target:  5'- uGUCGAUGAUC-UCGUCGgcucGGUCcucgacgaGCUGCu -3'
miRNA:   3'- -CAGCUGCUAGuAGUAGU----CCAG--------CGGCG- -5'
16274 5' -52.9 NC_004084.1 + 53060 0.67 0.79475
Target:  5'- cGUCGA-GAUCGUCc-CAGuccUCGCCGCc -3'
miRNA:   3'- -CAGCUgCUAGUAGuaGUCc--AGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 52938 0.74 0.415292
Target:  5'- -gCGACGAUCuggcCGUCGGcGUCGUCGUg -3'
miRNA:   3'- caGCUGCUAGua--GUAGUC-CAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 51169 0.7 0.650826
Target:  5'- --aGACGGUCGccgagcacgcgccgaUCGUCgAGGUCGgCGCu -3'
miRNA:   3'- cagCUGCUAGU---------------AGUAG-UCCAGCgGCG- -5'
16274 5' -52.9 NC_004084.1 + 51014 0.7 0.624296
Target:  5'- cGUCGuCGAUCGccuugcucagcUCGUCGaugcGGUCGCUGUu -3'
miRNA:   3'- -CAGCuGCUAGU-----------AGUAGU----CCAGCGGCG- -5'
16274 5' -52.9 NC_004084.1 + 50627 0.76 0.344229
Target:  5'- cGUCGACGGUCAgagcguucuuuUCAgugaugcgacUCAGGUCGuuGUu -3'
miRNA:   3'- -CAGCUGCUAGU-----------AGU----------AGUCCAGCggCG- -5'
16274 5' -52.9 NC_004084.1 + 50467 0.67 0.79475
Target:  5'- gGUCGGCGGU-GUCGUUcgccgauguugaGGGUCGggauCCGCg -3'
miRNA:   3'- -CAGCUGCUAgUAGUAG------------UCCAGC----GGCG- -5'
16274 5' -52.9 NC_004084.1 + 50299 0.66 0.849904
Target:  5'- -gCGuCGGUCAUCAgguUCAGGaugCGguCCGCa -3'
miRNA:   3'- caGCuGCUAGUAGU---AGUCCa--GC--GGCG- -5'
16274 5' -52.9 NC_004084.1 + 49339 0.67 0.804431
Target:  5'- aUCGGCGAUCGU-GUCgAGGUgaucgucgaCGUCGCc -3'
miRNA:   3'- cAGCUGCUAGUAgUAG-UCCA---------GCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.