miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16283 5' -53.5 NC_004084.1 + 58242 0.72 0.493622
Target:  5'- -cUUCUGGgaccuucACGAUCGCGACCAcuACGcCu -3'
miRNA:   3'- caAGGACC-------UGCUAGCGCUGGU--UGCaG- -5'
16283 5' -53.5 NC_004084.1 + 57668 0.69 0.635353
Target:  5'- --gCCUGGugGuccaGCGccuCCGACGUCg -3'
miRNA:   3'- caaGGACCugCuag-CGCu--GGUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 55370 0.67 0.77185
Target:  5'- aGUUCCUcGAgGGUgGCGAUCAucgccguauucgccACGUCg -3'
miRNA:   3'- -CAAGGAcCUgCUAgCGCUGGU--------------UGCAG- -5'
16283 5' -53.5 NC_004084.1 + 51519 0.67 0.774883
Target:  5'- -cUCgUcGaGACGGUCGCGAucCCGACGUa -3'
miRNA:   3'- caAGgA-C-CUGCUAGCGCU--GGUUGCAg -5'
16283 5' -53.5 NC_004084.1 + 50813 0.66 0.804431
Target:  5'- -gUCCUGGACccguUCGCGggcGCCGGCa-- -3'
miRNA:   3'- caAGGACCUGcu--AGCGC---UGGUUGcag -5'
16283 5' -53.5 NC_004084.1 + 49529 0.69 0.668466
Target:  5'- -aUCCacGGACGAUCGagguGAUCGGCGUg -3'
miRNA:   3'- caAGGa-CCUGCUAGCg---CUGGUUGCAg -5'
16283 5' -53.5 NC_004084.1 + 49009 0.67 0.774883
Target:  5'- -gUCCguguCGAUCGUGACCGacacgACGUCc -3'
miRNA:   3'- caAGGaccuGCUAGCGCUGGU-----UGCAG- -5'
16283 5' -53.5 NC_004084.1 + 48027 0.73 0.434414
Target:  5'- --aCCUGGACGA-CGaCGAgcUCGACGUCg -3'
miRNA:   3'- caaGGACCUGCUaGC-GCU--GGUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 47011 0.74 0.405927
Target:  5'- aGUUCCUcgaGGACG-UCGCGAUCGAUGa- -3'
miRNA:   3'- -CAAGGA---CCUGCuAGCGCUGGUUGCag -5'
16283 5' -53.5 NC_004084.1 + 46753 0.66 0.804431
Target:  5'- -gUCCUcGcCGuagucGUCGcCGACCGACGUCg -3'
miRNA:   3'- caAGGAcCuGC-----UAGC-GCUGGUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 43117 0.66 0.841234
Target:  5'- -aUCCUGGGCGGUC---AUCAcCGUCg -3'
miRNA:   3'- caAGGACCUGCUAGcgcUGGUuGCAG- -5'
16283 5' -53.5 NC_004084.1 + 42300 0.71 0.558426
Target:  5'- cGUUCaCgaucgGcGACGAUCGCGACgAcCGUCg -3'
miRNA:   3'- -CAAG-Ga----C-CUGCUAGCGCUGgUuGCAG- -5'
16283 5' -53.5 NC_004084.1 + 41774 0.69 0.679448
Target:  5'- -cUCCcGGACGAcgUCGaCGACgAggGCGUCa -3'
miRNA:   3'- caAGGaCCUGCU--AGC-GCUGgU--UGCAG- -5'
16283 5' -53.5 NC_004084.1 + 41717 1.11 0.001354
Target:  5'- aGUUCCUGGACGAUCGCGACCAACGUCg -3'
miRNA:   3'- -CAAGGACCUGCUAGCGCUGGUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 41441 0.66 0.841234
Target:  5'- ---gCUGGGcCGA-CGCGAUCGAgGUCu -3'
miRNA:   3'- caagGACCU-GCUaGCGCUGGUUgCAG- -5'
16283 5' -53.5 NC_004084.1 + 40916 0.68 0.689294
Target:  5'- --gCCUGGACGAggaGCagcuaccgggcugGACgGACGUCg -3'
miRNA:   3'- caaGGACCUGCUag-CG-------------CUGgUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 39606 0.68 0.733455
Target:  5'- -cUCCUGGACG-UgGCcGgCGACGUCc -3'
miRNA:   3'- caAGGACCUGCuAgCGcUgGUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 38523 0.66 0.804431
Target:  5'- -aUCgaUGGugGAUCgGCGgACCAACGa- -3'
miRNA:   3'- caAGg-ACCugCUAG-CGC-UGGUUGCag -5'
16283 5' -53.5 NC_004084.1 + 35480 0.66 0.841234
Target:  5'- -gUCgaGGcgGCGAUCGCcgagaucccGACCAACGgUCg -3'
miRNA:   3'- caAGgaCC--UGCUAGCG---------CUGGUUGC-AG- -5'
16283 5' -53.5 NC_004084.1 + 35363 0.66 0.813931
Target:  5'- --gCCgGcGACGAUCGCGaagugcGCCAagaucACGUCg -3'
miRNA:   3'- caaGGaC-CUGCUAGCGC------UGGU-----UGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.