miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16283 5' -53.5 NC_004084.1 + 41441 0.66 0.841234
Target:  5'- ---gCUGGGcCGA-CGCGAUCGAgGUCu -3'
miRNA:   3'- caagGACCU-GCUaGCGCUGGUUgCAG- -5'
16283 5' -53.5 NC_004084.1 + 13796 0.68 0.690386
Target:  5'- -gUCC-GGuuGGUCGCGACCGagGCGaUCg -3'
miRNA:   3'- caAGGaCCugCUAGCGCUGGU--UGC-AG- -5'
16283 5' -53.5 NC_004084.1 + 18828 0.69 0.668466
Target:  5'- -gUCCaggaGGACGGUggCGCGGCUuuCGUCg -3'
miRNA:   3'- caAGGa---CCUGCUA--GCGCUGGuuGCAG- -5'
16283 5' -53.5 NC_004084.1 + 41717 1.11 0.001354
Target:  5'- aGUUCCUGGACGAUCGCGACCAACGUCg -3'
miRNA:   3'- -CAAGGACCUGCUAGCGCUGGUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 6123 0.66 0.812989
Target:  5'- cGUUCa-GGuCGAUgcgauucCGCGACCAGCGcCg -3'
miRNA:   3'- -CAAGgaCCuGCUA-------GCGCUGGUUGCaG- -5'
16283 5' -53.5 NC_004084.1 + 46753 0.66 0.804431
Target:  5'- -gUCCUcGcCGuagucGUCGcCGACCGACGUCg -3'
miRNA:   3'- caAGGAcCuGC-----UAGC-GCUGGUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 29410 0.67 0.79475
Target:  5'- -cUCCUgGGGCG-UCGCGGuuGcCGUCg -3'
miRNA:   3'- caAGGA-CCUGCuAGCGCUggUuGCAG- -5'
16283 5' -53.5 NC_004084.1 + 6158 0.67 0.791811
Target:  5'- gGUUCCUGG-CGAUCGgGcuCCAGguggaccucgagcuCGUCu -3'
miRNA:   3'- -CAAGGACCuGCUAGCgCu-GGUU--------------GCAG- -5'
16283 5' -53.5 NC_004084.1 + 49009 0.67 0.774883
Target:  5'- -gUCCguguCGAUCGUGACCGacacgACGUCc -3'
miRNA:   3'- caAGGaccuGCUAGCGCUGGU-----UGCAG- -5'
16283 5' -53.5 NC_004084.1 + 27181 0.68 0.701266
Target:  5'- -aUCuCaGGACGAUCGCGACgCugaauGCGUa -3'
miRNA:   3'- caAG-GaCCUGCUAGCGCUG-Gu----UGCAg -5'
16283 5' -53.5 NC_004084.1 + 55370 0.67 0.77185
Target:  5'- aGUUCCUcGAgGGUgGCGAUCAucgccguauucgccACGUCg -3'
miRNA:   3'- -CAAGGAcCUgCUAgCGCUGGU--------------UGCAG- -5'
16283 5' -53.5 NC_004084.1 + 29357 0.67 0.774883
Target:  5'- --cCCgagcGGGCGGUCGCGGCCuGCc-- -3'
miRNA:   3'- caaGGa---CCUGCUAGCGCUGGuUGcag -5'
16283 5' -53.5 NC_004084.1 + 43117 0.66 0.841234
Target:  5'- -aUCCUGGGCGGUC---AUCAcCGUCg -3'
miRNA:   3'- caAGGACCUGCUAGcgcUGGUuGCAG- -5'
16283 5' -53.5 NC_004084.1 + 10246 0.68 0.743995
Target:  5'- --gCCUGG-UGAgUCGCGGUCGGCGUCc -3'
miRNA:   3'- caaGGACCuGCU-AGCGCUGGUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 13567 0.66 0.832342
Target:  5'- -cUCCUGGAa-GUCGCgGGCCGAUccgaccucgGUCa -3'
miRNA:   3'- caAGGACCUgcUAGCG-CUGGUUG---------CAG- -5'
16283 5' -53.5 NC_004084.1 + 20917 0.67 0.788858
Target:  5'- gGUUCCUGGAUGcucgucuguucggguAUCuuccCGACCGugucACGUCg -3'
miRNA:   3'- -CAAGGACCUGC---------------UAGc---GCUGGU----UGCAG- -5'
16283 5' -53.5 NC_004084.1 + 18900 0.68 0.733455
Target:  5'- -aUCCUcgaGGACG-UCGCGAacgaUGACGUCc -3'
miRNA:   3'- caAGGA---CCUGCuAGCGCUg---GUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 16621 0.68 0.690386
Target:  5'- -cUCCUcgaGGuCGAUCGUGACgcccucgucguCGACGUCg -3'
miRNA:   3'- caAGGA---CCuGCUAGCGCUG-----------GUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 16660 0.66 0.813931
Target:  5'- -gUCCgGGAgGuccUCGUcGCCGGCGUCg -3'
miRNA:   3'- caAGGaCCUgCu--AGCGcUGGUUGCAG- -5'
16283 5' -53.5 NC_004084.1 + 29249 0.66 0.804431
Target:  5'- aGUUCCgcUGGACGAacggcccgCGCGACCAc---- -3'
miRNA:   3'- -CAAGG--ACCUGCUa-------GCGCUGGUugcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.