miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16297 3' -54.6 NC_004084.1 + 8863 0.66 0.81628
Target:  5'- aCCG-CUCGAucUCAGCU-UUCgacacgCCGAUCa -3'
miRNA:   3'- -GGCuGAGCU--AGUCGAcGAGa-----GGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 54208 0.66 0.81628
Target:  5'- uCCGAC-CG-UCAGCgGCUCgagUCgGAUCu -3'
miRNA:   3'- -GGCUGaGCuAGUCGaCGAG---AGgCUGG- -5'
16297 3' -54.6 NC_004084.1 + 40347 0.66 0.805126
Target:  5'- cUCGAUgUUGAUCGGCcguuugucacggGCUCUCCGuuCg -3'
miRNA:   3'- -GGCUG-AGCUAGUCGa-----------CGAGAGGCugG- -5'
16297 3' -54.6 NC_004084.1 + 32988 0.66 0.797547
Target:  5'- cCCGGCagUGAUUcaAGCUGCcCUCgaggaGACCa -3'
miRNA:   3'- -GGCUGa-GCUAG--UCGACGaGAGg----CUGG- -5'
16297 3' -54.6 NC_004084.1 + 47422 0.66 0.797547
Target:  5'- gUCGGCUCcucGUCAGCcGCaUCUCCu-CCa -3'
miRNA:   3'- -GGCUGAGc--UAGUCGaCG-AGAGGcuGG- -5'
16297 3' -54.6 NC_004084.1 + 16547 0.66 0.787923
Target:  5'- uUGGCUC--UCAacGCgGCUCUCgGGCCg -3'
miRNA:   3'- gGCUGAGcuAGU--CGaCGAGAGgCUGG- -5'
16297 3' -54.6 NC_004084.1 + 13411 0.67 0.768213
Target:  5'- gCGACUCGAUC-GUUGCg--CCGgaGCUa -3'
miRNA:   3'- gGCUGAGCUAGuCGACGagaGGC--UGG- -5'
16297 3' -54.6 NC_004084.1 + 5404 0.67 0.768213
Target:  5'- uCCG-CUCGAUcCAGUaGgUCUCgUGGCCg -3'
miRNA:   3'- -GGCuGAGCUA-GUCGaCgAGAG-GCUGG- -5'
16297 3' -54.6 NC_004084.1 + 23117 0.67 0.767212
Target:  5'- gCCGACgaaCG-UCAGCagGCUCUcgcgcugacuucgCCGACUc -3'
miRNA:   3'- -GGCUGa--GCuAGUCGa-CGAGA-------------GGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 19091 0.67 0.758148
Target:  5'- gUCGACgUCGAUCAGCaccgcgGCggCUaCCGugUg -3'
miRNA:   3'- -GGCUG-AGCUAGUCGa-----CGa-GA-GGCugG- -5'
16297 3' -54.6 NC_004084.1 + 35140 0.67 0.747958
Target:  5'- -gGACU-GGUCGGCcGCUCggucUCCaGACCg -3'
miRNA:   3'- ggCUGAgCUAGUCGaCGAG----AGG-CUGG- -5'
16297 3' -54.6 NC_004084.1 + 26033 0.67 0.737653
Target:  5'- gCgGACUCGAUCgagcggAGCUGCUUgaagagaagCuCGAUCg -3'
miRNA:   3'- -GgCUGAGCUAG------UCGACGAGa--------G-GCUGG- -5'
16297 3' -54.6 NC_004084.1 + 45486 0.67 0.727245
Target:  5'- uUCGGCgUCGAUCAGCg--UCUacCUGGCCg -3'
miRNA:   3'- -GGCUG-AGCUAGUCGacgAGA--GGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 22183 0.67 0.716745
Target:  5'- gUCGACcCGGUaGGCgaGUUCUCCGAgCa -3'
miRNA:   3'- -GGCUGaGCUAgUCGa-CGAGAGGCUgG- -5'
16297 3' -54.6 NC_004084.1 + 53256 0.68 0.706163
Target:  5'- aUCGACUCGAgu-GCUGC-CUCaggGACg -3'
miRNA:   3'- -GGCUGAGCUaguCGACGaGAGg--CUGg -5'
16297 3' -54.6 NC_004084.1 + 5214 0.68 0.695511
Target:  5'- gCGACUCGA-CGuGCUGCUUccagUCgCGACg -3'
miRNA:   3'- gGCUGAGCUaGU-CGACGAG----AG-GCUGg -5'
16297 3' -54.6 NC_004084.1 + 41816 0.68 0.684799
Target:  5'- -aGAC-CGAUCAGCgcagcagucGCcgCUCCGACg -3'
miRNA:   3'- ggCUGaGCUAGUCGa--------CGa-GAGGCUGg -5'
16297 3' -54.6 NC_004084.1 + 29784 0.68 0.684799
Target:  5'- gCGACg-GGUCGGCguacacCUaCUCCGGCCg -3'
miRNA:   3'- gGCUGagCUAGUCGac----GA-GAGGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 52773 0.68 0.6805
Target:  5'- gCgGACuUCGAcgagaaccaggagCGGCUGCUUcaggagguUCCGACCg -3'
miRNA:   3'- -GgCUG-AGCUa------------GUCGACGAG--------AGGCUGG- -5'
16297 3' -54.6 NC_004084.1 + 12663 0.68 0.674038
Target:  5'- aUCGGCguccCGAUCgAGCggacugGUUCguagCCGACCa -3'
miRNA:   3'- -GGCUGa---GCUAG-UCGa-----CGAGa---GGCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.