miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16298 3' -55.2 NC_004084.1 + 58106 0.67 0.748276
Target:  5'- cCGCGcCCcugcuuCGGGUUcucgucggcgGUCGUCGUCGa -3'
miRNA:   3'- aGUGCuGGcu----GCCCAG----------UAGCAGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 54120 0.7 0.557996
Target:  5'- cCGCGAucaCCGGCGGGaCGUCGUggacuuugaggaUGUCGu -3'
miRNA:   3'- aGUGCU---GGCUGCCCaGUAGCA------------GCAGC- -5'
16298 3' -55.2 NC_004084.1 + 52944 0.7 0.537088
Target:  5'- aUCugG-CCGuCGGcGUCGUCGugaUCGUCGc -3'
miRNA:   3'- -AGugCuGGCuGCC-CAGUAGC---AGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 52944 0.67 0.707024
Target:  5'- gUCACGACCGGCGGcugggaGcUCGUCa -3'
miRNA:   3'- -AGUGCUGGCUGCCcaguagC-AGCAGc -5'
16298 3' -55.2 NC_004084.1 + 52659 0.67 0.707024
Target:  5'- -uGCGGCgaGACGGag-AUCGUCGUCGa -3'
miRNA:   3'- agUGCUGg-CUGCCcagUAGCAGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 50991 0.66 0.787738
Target:  5'- cUCGCcACCGuCGGcaUCGcccUCGUCGUCGa -3'
miRNA:   3'- -AGUGcUGGCuGCCc-AGU---AGCAGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 50865 0.68 0.685939
Target:  5'- --uCGGCCGACGGuUCAUCGgCGUa- -3'
miRNA:   3'- aguGCUGGCUGCCcAGUAGCaGCAgc -5'
16298 3' -55.2 NC_004084.1 + 50132 0.68 0.696511
Target:  5'- cCGCGAUCguccggauGACGaGGUCGUUGUCGagGa -3'
miRNA:   3'- aGUGCUGG--------CUGC-CCAGUAGCAGCagC- -5'
16298 3' -55.2 NC_004084.1 + 49665 0.67 0.727831
Target:  5'- aC-CGGCUGAagcCGGGUgGUCcGUCGUCu -3'
miRNA:   3'- aGuGCUGGCU---GCCCAgUAG-CAGCAGc -5'
16298 3' -55.2 NC_004084.1 + 48991 0.69 0.632545
Target:  5'- gUCGCGGCCcaucGCGcGGUCcgUGUCGaUCGu -3'
miRNA:   3'- -AGUGCUGGc---UGC-CCAGuaGCAGC-AGC- -5'
16298 3' -55.2 NC_004084.1 + 46270 0.7 0.575946
Target:  5'- -uGCGACauccaucgcuucguCGACGGaGUCGUaGUCGUCGa -3'
miRNA:   3'- agUGCUG--------------GCUGCC-CAGUAgCAGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 46128 0.69 0.632545
Target:  5'- gUUACGAgCCGACuGGGUC-UCGUuCGcCGa -3'
miRNA:   3'- -AGUGCU-GGCUG-CCCAGuAGCA-GCaGC- -5'
16298 3' -55.2 NC_004084.1 + 45852 0.68 0.696511
Target:  5'- aUCGCuugcCCGucuucggugaACGGGaCGUCGUCGUCGc -3'
miRNA:   3'- -AGUGcu--GGC----------UGCCCaGUAGCAGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 43689 0.68 0.664658
Target:  5'- -uGCGACgGACGGG-CG-CGUCGaCGa -3'
miRNA:   3'- agUGCUGgCUGCCCaGUaGCAGCaGC- -5'
16298 3' -55.2 NC_004084.1 + 42864 0.68 0.675318
Target:  5'- gCAuCGACCGACccGUCGaCGUCGUCc -3'
miRNA:   3'- aGU-GCUGGCUGccCAGUaGCAGCAGc -5'
16298 3' -55.2 NC_004084.1 + 41629 0.68 0.675318
Target:  5'- -gGCGACgGucCGGGaCAUCGaCGUCGa -3'
miRNA:   3'- agUGCUGgCu-GCCCaGUAGCaGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 40629 0.69 0.58976
Target:  5'- uUCACGACUGAagaGGGcaaCGUCGaCGUCc -3'
miRNA:   3'- -AGUGCUGGCUg--CCCa--GUAGCaGCAGc -5'
16298 3' -55.2 NC_004084.1 + 35404 1.1 0.001303
Target:  5'- aUCACGACCGACGGGUCAUCGUCGUCGa -3'
miRNA:   3'- -AGUGCUGGCUGCCCAGUAGCAGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 31320 0.67 0.748276
Target:  5'- uUCugGAuCCGGCucGGGauccggagCAguUCGUCGUCGa -3'
miRNA:   3'- -AGugCU-GGCUG--CCCa-------GU--AGCAGCAGC- -5'
16298 3' -55.2 NC_004084.1 + 29066 0.74 0.32569
Target:  5'- cCGCGACCGcccgcuCGGGggCGUCGUCGcCGc -3'
miRNA:   3'- aGUGCUGGCu-----GCCCa-GUAGCAGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.