Results 1 - 20 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16298 | 3' | -55.2 | NC_004084.1 | + | 6545 | 0.66 | 0.768273 |
Target: 5'- aUCuCGACCGGCGuccGGUaguUCGacUCGUCGa -3' miRNA: 3'- -AGuGCUGGCUGC---CCAgu-AGC--AGCAGC- -5' |
|||||||
16298 | 3' | -55.2 | NC_004084.1 | + | 42864 | 0.68 | 0.675318 |
Target: 5'- gCAuCGACCGACccGUCGaCGUCGUCc -3' miRNA: 3'- aGU-GCUGGCUGccCAGUaGCAGCAGc -5' |
|||||||
16298 | 3' | -55.2 | NC_004084.1 | + | 19646 | 0.68 | 0.664658 |
Target: 5'- -aGCGcCCGAa-GGUCGUCGUgCGUCa -3' miRNA: 3'- agUGCuGGCUgcCCAGUAGCA-GCAGc -5' |
|||||||
16298 | 3' | -55.2 | NC_004084.1 | + | 35404 | 1.1 | 0.001303 |
Target: 5'- aUCACGACCGACGGGUCAUCGUCGUCGa -3' miRNA: 3'- -AGUGCUGGCUGCCCAGUAGCAGCAGC- -5' |
|||||||
16298 | 3' | -55.2 | NC_004084.1 | + | 26190 | 0.66 | 0.806589 |
Target: 5'- -aACGACCGuCGGcGUCGUCGagGa-- -3' miRNA: 3'- agUGCUGGCuGCC-CAGUAGCagCagc -5' |
|||||||
16298 | 3' | -55.2 | NC_004084.1 | + | 50991 | 0.66 | 0.787738 |
Target: 5'- cUCGCcACCGuCGGcaUCGcccUCGUCGUCGa -3' miRNA: 3'- -AGUGcUGGCuGCCc-AGU---AGCAGCAGC- -5' |
|||||||
16298 | 3' | -55.2 | NC_004084.1 | + | 13123 | 0.66 | 0.787738 |
Target: 5'- cCugGAgUuGCGGGcCGUCGUCGUa- -3' miRNA: 3'- aGugCUgGcUGCCCaGUAGCAGCAgc -5' |
|||||||
16298 | 3' | -55.2 | NC_004084.1 | + | 12742 | 0.66 | 0.787738 |
Target: 5'- gCACGaucucgucgacGCCGAcCGucUCGUCGUUGUCGg -3' miRNA: 3'- aGUGC-----------UGGCU-GCccAGUAGCAGCAGC- -5' |
|||||||
16298 | 3' | -55.2 | NC_004084.1 | + | 26478 | 0.66 | 0.778077 |
Target: 5'- gCGCG-CCGGCGacguugaguguGGUCGUCGUCuUCc -3' miRNA: 3'- aGUGCuGGCUGC-----------CCAGUAGCAGcAGc -5' |
|||||||
16298 | 3' | -55.2 | NC_004084.1 | + | 11324 | 0.68 | 0.675318 |
Target: 5'- --cCGACCGGCGGGUUGUCGggauuagacaUCGcUCc -3' miRNA: 3'- aguGCUGGCUGCCCAGUAGC----------AGC-AGc -5' |
|||||||
16298 | 3' | -55.2 | NC_004084.1 | + | 50132 | 0.68 | 0.696511 |
Target: 5'- cCGCGAUCguccggauGACGaGGUCGUUGUCGagGa -3' miRNA: 3'- aGUGCUGG--------CUGC-CCAGUAGCAGCagC- -5' |
|||||||
16298 | 3' | -55.2 | NC_004084.1 | + | 45852 | 0.68 | 0.696511 |
Target: 5'- aUCGCuugcCCGucuucggugaACGGGaCGUCGUCGUCGc -3' miRNA: 3'- -AGUGcu--GGC----------UGCCCaGUAGCAGCAGC- -5' |
|||||||
16298 | 3' | -55.2 | NC_004084.1 | + | 3348 | 0.66 | 0.768273 |
Target: 5'- -aACcGCCGAUuGGUCGUCGacgugCGUCGa -3' miRNA: 3'- agUGcUGGCUGcCCAGUAGCa----GCAGC- -5' |
|||||||
16298 | 3' | -55.2 | NC_004084.1 | + | 18976 | 0.68 | 0.685939 |
Target: 5'- cCAguCGGCCGGCGGGgaaGUCGUagGUCc -3' miRNA: 3'- aGU--GCUGGCUGCCCag-UAGCAg-CAGc -5' |
|||||||
16298 | 3' | -55.2 | NC_004084.1 | + | 58106 | 0.67 | 0.748276 |
Target: 5'- cCGCGcCCcugcuuCGGGUUcucgucggcgGUCGUCGUCGa -3' miRNA: 3'- aGUGCuGGcu----GCCCAG----------UAGCAGCAGC- -5' |
|||||||
16298 | 3' | -55.2 | NC_004084.1 | + | 18696 | 0.67 | 0.707024 |
Target: 5'- gUCAuccuCG-UCGACGGcGUCGUCGcCGUCa -3' miRNA: 3'- -AGU----GCuGGCUGCC-CAGUAGCaGCAGc -5' |
|||||||
16298 | 3' | -55.2 | NC_004084.1 | + | 5112 | 0.68 | 0.675318 |
Target: 5'- cCGCGAUCGcCGGGUCAaCGUacUCGc -3' miRNA: 3'- aGUGCUGGCuGCCCAGUaGCAgcAGC- -5' |
|||||||
16298 | 3' | -55.2 | NC_004084.1 | + | 16605 | 0.68 | 0.675318 |
Target: 5'- cUACGGacCCGGCGGGcUCcUCGagGUCGa -3' miRNA: 3'- aGUGCU--GGCUGCCC-AGuAGCagCAGC- -5' |
|||||||
16298 | 3' | -55.2 | NC_004084.1 | + | 17328 | 0.67 | 0.738104 |
Target: 5'- cCGCGG-CGACGGcccgCAUCGucUCGUCGa -3' miRNA: 3'- aGUGCUgGCUGCCca--GUAGC--AGCAGC- -5' |
|||||||
16298 | 3' | -55.2 | NC_004084.1 | + | 49665 | 0.67 | 0.727831 |
Target: 5'- aC-CGGCUGAagcCGGGUgGUCcGUCGUCu -3' miRNA: 3'- aGuGCUGGCU---GCCCAgUAG-CAGCAGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home