miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16305 5' -56.6 NC_004084.1 + 31410 0.66 0.708539
Target:  5'- aUCgGCGaAGUCGcagacgacgcGGCCGCGAUGGa-- -3'
miRNA:   3'- -AGgUGC-UCAGCu---------UCGGCGCUGCCacu -5'
16305 5' -56.6 NC_004084.1 + 55540 0.66 0.697999
Target:  5'- cUCCGCGA-UCGcgcuggcuGGCCGCGACGa--- -3'
miRNA:   3'- -AGGUGCUcAGCu-------UCGGCGCUGCcacu -5'
16305 5' -56.6 NC_004084.1 + 47767 0.66 0.697999
Target:  5'- aUCCAUca-UCGAcGCCGCGuugauguCGGUGAg -3'
miRNA:   3'- -AGGUGcucAGCUuCGGCGCu------GCCACU- -5'
16305 5' -56.6 NC_004084.1 + 16487 0.66 0.696941
Target:  5'- gUCCGCugcaAGUgCGAAgggaauccugacuGCCGCGAcCGGUGGc -3'
miRNA:   3'- -AGGUGc---UCA-GCUU-------------CGGCGCU-GCCACU- -5'
16305 5' -56.6 NC_004084.1 + 2037 0.66 0.687397
Target:  5'- cUCCGagagguCGAuGUCGAuGCCGU-ACGGUGGa -3'
miRNA:   3'- -AGGU------GCU-CAGCUuCGGCGcUGCCACU- -5'
16305 5' -56.6 NC_004084.1 + 39630 0.66 0.687397
Target:  5'- cUCgACGAGUCGAucguaCGCGACGccGAg -3'
miRNA:   3'- -AGgUGCUCAGCUucg--GCGCUGCcaCU- -5'
16305 5' -56.6 NC_004084.1 + 7464 0.66 0.676745
Target:  5'- aCgGCGAcUCG-AGCgGCGACGGcGAa -3'
miRNA:   3'- aGgUGCUcAGCuUCGgCGCUGCCaCU- -5'
16305 5' -56.6 NC_004084.1 + 5505 0.66 0.676745
Target:  5'- gUCgACGAGUCGuu-CCuaGugGGUGGc -3'
miRNA:   3'- -AGgUGCUCAGCuucGGcgCugCCACU- -5'
16305 5' -56.6 NC_004084.1 + 50617 0.66 0.676745
Target:  5'- -gUACGGGUucgcCGAcGCUGCGGCGGgGAa -3'
miRNA:   3'- agGUGCUCA----GCUuCGGCGCUGCCaCU- -5'
16305 5' -56.6 NC_004084.1 + 29410 0.66 0.666053
Target:  5'- cUCCugGGGcgucgCGGuuGCCGuCGACGGcGAg -3'
miRNA:   3'- -AGGugCUCa----GCUu-CGGC-GCUGCCaCU- -5'
16305 5' -56.6 NC_004084.1 + 21795 0.67 0.643512
Target:  5'- aUCGCGAGcCGAuGCaccucaacgucagCGuCGACGGUGAg -3'
miRNA:   3'- aGGUGCUCaGCUuCG-------------GC-GCUGCCACU- -5'
16305 5' -56.6 NC_004084.1 + 12428 0.67 0.633833
Target:  5'- aCCGCGucUCGAAcGCCGUGACGa--- -3'
miRNA:   3'- aGGUGCucAGCUU-CGGCGCUGCcacu -5'
16305 5' -56.6 NC_004084.1 + 34567 0.67 0.627379
Target:  5'- aUCGCGAGggCGcuGGCggcgacugccuccauCGCGACGGUGGa -3'
miRNA:   3'- aGGUGCUCa-GCu-UCG---------------GCGCUGCCACU- -5'
16305 5' -56.6 NC_004084.1 + 7357 0.67 0.623078
Target:  5'- cCCAgGAGgcgCGGuucGCUcCGACGGUGAu -3'
miRNA:   3'- aGGUgCUCa--GCUu--CGGcGCUGCCACU- -5'
16305 5' -56.6 NC_004084.1 + 45461 0.67 0.623078
Target:  5'- cCCGCGAGaUCGAAGCCGagccucguuCGGCGucGAu -3'
miRNA:   3'- aGGUGCUC-AGCUUCGGC---------GCUGCcaCU- -5'
16305 5' -56.6 NC_004084.1 + 3115 0.68 0.590892
Target:  5'- aUCCACGAGUaCGggGCUGgGAuCGa--- -3'
miRNA:   3'- -AGGUGCUCA-GCuuCGGCgCU-GCcacu -5'
16305 5' -56.6 NC_004084.1 + 57242 0.68 0.580218
Target:  5'- gUCCACGAccgcGUCGgcGaugaCGCGAaGGUGGu -3'
miRNA:   3'- -AGGUGCU----CAGCuuCg---GCGCUgCCACU- -5'
16305 5' -56.6 NC_004084.1 + 30238 0.68 0.580218
Target:  5'- gUCCGCGGcgacGUCGAacaGGCCGagGACGGa-- -3'
miRNA:   3'- -AGGUGCU----CAGCU---UCGGCg-CUGCCacu -5'
16305 5' -56.6 NC_004084.1 + 36002 0.68 0.580218
Target:  5'- aCCGCGucGUCGGAGCCGaGAaGcGUGAu -3'
miRNA:   3'- aGGUGCu-CAGCUUCGGCgCUgC-CACU- -5'
16305 5' -56.6 NC_004084.1 + 1559 0.68 0.569586
Target:  5'- gCCGuCGAGcCGGAGcCCGCGaACGGg-- -3'
miRNA:   3'- aGGU-GCUCaGCUUC-GGCGC-UGCCacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.