miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16309 3' -53.8 NC_004084.1 + 42013 0.66 0.843497
Target:  5'- uUGCUCgagugGCCguCGCGAGCGagGCGgUCGACa -3'
miRNA:   3'- cAUGAG-----CGG--GCGCUUGU--UGC-AGCUGc -5'
16309 3' -53.8 NC_004084.1 + 12841 0.67 0.78805
Target:  5'- gGUugUUGaaCGCGAACc-CGUCGGCGu -3'
miRNA:   3'- -CAugAGCggGCGCUUGuuGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 50449 0.67 0.768173
Target:  5'- -cACUCGCCCuCGucCuGCGgUCGGCGg -3'
miRNA:   3'- caUGAGCGGGcGCuuGuUGC-AGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 29192 1.08 0.002033
Target:  5'- aGUACUCGCCCGCGAACAACGUCGACGc -3'
miRNA:   3'- -CAUGAGCGGGCGCUUGUUGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 2433 0.66 0.83475
Target:  5'- aUGCUCGCCaucgGCGAuCAgccccuccGCGUCGcCGu -3'
miRNA:   3'- cAUGAGCGGg---CGCUuGU--------UGCAGCuGC- -5'
16309 3' -53.8 NC_004084.1 + 19129 0.66 0.825794
Target:  5'- gGUGCUCgacgaucgaGUCCGCGAc--GCGaUCGACGa -3'
miRNA:   3'- -CAUGAG---------CGGGCGCUuguUGC-AGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 28977 0.66 0.816635
Target:  5'- cUAC-CaGCgCGCGAcCGACGUCGGCc -3'
miRNA:   3'- cAUGaG-CGgGCGCUuGUUGCAGCUGc -5'
16309 3' -53.8 NC_004084.1 + 28666 0.66 0.816635
Target:  5'- cUAC-CGCCgcaGCGAGCucAACGUCGAg- -3'
miRNA:   3'- cAUGaGCGGg--CGCUUG--UUGCAGCUgc -5'
16309 3' -53.8 NC_004084.1 + 49569 0.67 0.797753
Target:  5'- cGUACUCGaaguaCCGCuuuu--CGUCGACGa -3'
miRNA:   3'- -CAUGAGCg----GGCGcuuguuGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 46263 0.67 0.78805
Target:  5'- --cCUCGUgUGCGAcauccaucGCuuCGUCGACGg -3'
miRNA:   3'- cauGAGCGgGCGCU--------UGuuGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 14639 0.67 0.797753
Target:  5'- -gACUcucCGCCgGCGAGCGcccaGUCGAUGc -3'
miRNA:   3'- caUGA---GCGGgCGCUUGUug--CAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 13995 0.66 0.807285
Target:  5'- cGUGCUCGUCCGUucgGAACGG-GUUGcCGa -3'
miRNA:   3'- -CAUGAGCGGGCG---CUUGUUgCAGCuGC- -5'
16309 3' -53.8 NC_004084.1 + 28833 0.66 0.843497
Target:  5'- -aACU-GCgCGCGAACGACGcccaccCGGCGa -3'
miRNA:   3'- caUGAgCGgGCGCUUGUUGCa-----GCUGC- -5'
16309 3' -53.8 NC_004084.1 + 10457 0.67 0.797753
Target:  5'- aGUACUCGa--GCGGAcCAACGUCGuuCGu -3'
miRNA:   3'- -CAUGAGCgggCGCUU-GUUGCAGCu-GC- -5'
16309 3' -53.8 NC_004084.1 + 6483 0.66 0.843497
Target:  5'- --cCUCGCCCGgcUGAGCGAacgUGUCGAa- -3'
miRNA:   3'- cauGAGCGGGC--GCUUGUU---GCAGCUgc -5'
16309 3' -53.8 NC_004084.1 + 30232 0.66 0.807285
Target:  5'- -gGCgauGUCCGCG-GCGACGUCGAa- -3'
miRNA:   3'- caUGag-CGGGCGCuUGUUGCAGCUgc -5'
16309 3' -53.8 NC_004084.1 + 46178 0.67 0.791951
Target:  5'- -aACUUGCCCagcugguaggcgGCGAGaucgucgucggauGCGUCGACGa -3'
miRNA:   3'- caUGAGCGGG------------CGCUUgu-----------UGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 14241 0.67 0.778186
Target:  5'- aUACUgGCCgG-GAACAGUGUCGACc -3'
miRNA:   3'- cAUGAgCGGgCgCUUGUUGCAGCUGc -5'
16309 3' -53.8 NC_004084.1 + 1566 0.66 0.843497
Target:  5'- -aGCcggaGCCCGCGAacggguccaggACGACGUCGccCGg -3'
miRNA:   3'- caUGag--CGGGCGCU-----------UGUUGCAGCu-GC- -5'
16309 3' -53.8 NC_004084.1 + 38184 0.66 0.816635
Target:  5'- ----aCGCUCGgcgucaucuCGAAUGACGUCGACGu -3'
miRNA:   3'- caugaGCGGGC---------GCUUGUUGCAGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.