miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16311 5' -54.4 NC_004084.1 + 51184 0.65 0.796991
Target:  5'- aCGCgccgAUCGUCGAggucggcGCUG-GCGCGGGCu -3'
miRNA:   3'- -GCGag--UGGUAGCU-------UGACgCGCGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 54020 0.66 0.792112
Target:  5'- aGCUCGCCgaaGUCGuGCUGCuuggGCuggaucgucuccucaGCGAACu -3'
miRNA:   3'- gCGAGUGG---UAGCuUGACG----CG---------------CGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 11979 0.66 0.788178
Target:  5'- uGUUC-UCGUCGAACUGCaCGaGGACg -3'
miRNA:   3'- gCGAGuGGUAGCUUGACGcGCgCUUG- -5'
16311 5' -54.4 NC_004084.1 + 11704 0.66 0.788178
Target:  5'- gGCgucggaaGCCAUCGAAgagaUGgGCGCuGAGCa -3'
miRNA:   3'- gCGag-----UGGUAGCUUg---ACgCGCG-CUUG- -5'
16311 5' -54.4 NC_004084.1 + 21471 0.66 0.768131
Target:  5'- gGCUCGCCcUCGAGg-GCG-GCGAu- -3'
miRNA:   3'- gCGAGUGGuAGCUUgaCGCgCGCUug -5'
16311 5' -54.4 NC_004084.1 + 29638 0.66 0.768131
Target:  5'- gGCUCcggaCGUCG-ACgacCGCGCGGACa -3'
miRNA:   3'- gCGAGug--GUAGCuUGac-GCGCGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 39647 0.66 0.768131
Target:  5'- aCGCgaCGCCGagGAACUcGCGCGCu--- -3'
miRNA:   3'- -GCGa-GUGGUagCUUGA-CGCGCGcuug -5'
16311 5' -54.4 NC_004084.1 + 32150 0.66 0.757891
Target:  5'- aGCggCACCAUCugGGACacggGCGacuuCGCGAACg -3'
miRNA:   3'- gCGa-GUGGUAG--CUUGa---CGC----GCGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 2008 0.66 0.747521
Target:  5'- aGgaCGCgAUCGAguucgacucccaGCUGgGCGCGAAg -3'
miRNA:   3'- gCgaGUGgUAGCU------------UGACgCGCGCUUg -5'
16311 5' -54.4 NC_004084.1 + 28262 0.67 0.737033
Target:  5'- aGUUCACCGUCGcGGCUuCGacuCGUGGACg -3'
miRNA:   3'- gCGAGUGGUAGC-UUGAcGC---GCGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 21657 0.67 0.726439
Target:  5'- cCGaCUCgaACUAUCGAGCccgacugcagguUGCGUuGCGAGCa -3'
miRNA:   3'- -GC-GAG--UGGUAGCUUG------------ACGCG-CGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 40204 0.67 0.726439
Target:  5'- uCGUUCACC-UCGAGCUGgacgaggaGaCGCGGAa -3'
miRNA:   3'- -GCGAGUGGuAGCUUGACg-------C-GCGCUUg -5'
16311 5' -54.4 NC_004084.1 + 45031 0.67 0.715751
Target:  5'- gGUUCAgC-UCGAACUgGCGCuCGGACu -3'
miRNA:   3'- gCGAGUgGuAGCUUGA-CGCGcGCUUG- -5'
16311 5' -54.4 NC_004084.1 + 57761 0.67 0.715751
Target:  5'- gCGUUCACgGagGAGCuUGCGgGCGAu- -3'
miRNA:   3'- -GCGAGUGgUagCUUG-ACGCgCGCUug -5'
16311 5' -54.4 NC_004084.1 + 32630 0.67 0.694136
Target:  5'- uCGCUCGCCAccUgGAgggauuccaugGCUGagaaGCGCGAccGCa -3'
miRNA:   3'- -GCGAGUGGU--AgCU-----------UGACg---CGCGCU--UG- -5'
16311 5' -54.4 NC_004084.1 + 49856 0.67 0.694136
Target:  5'- uCGCUCACCuuGUCGGACU-CG-GUGAGg -3'
miRNA:   3'- -GCGAGUGG--UAGCUUGAcGCgCGCUUg -5'
16311 5' -54.4 NC_004084.1 + 53948 0.68 0.687601
Target:  5'- gGCuUCGCCAgcUCGAACUcgaucguccagucggGCGCGuCGAGg -3'
miRNA:   3'- gCG-AGUGGU--AGCUUGA---------------CGCGC-GCUUg -5'
16311 5' -54.4 NC_004084.1 + 51829 0.68 0.67228
Target:  5'- cCGCcgacugUCGCCAcucUCGAAgaGCGCGUGGc- -3'
miRNA:   3'- -GCG------AGUGGU---AGCUUgaCGCGCGCUug -5'
16311 5' -54.4 NC_004084.1 + 27351 0.68 0.66129
Target:  5'- uGCUCugguCCAUCGGcaccgacgGCUG-GCGCGGGa -3'
miRNA:   3'- gCGAGu---GGUAGCU--------UGACgCGCGCUUg -5'
16311 5' -54.4 NC_004084.1 + 57907 0.68 0.660189
Target:  5'- cCGCUCAUCGaaguccgaccgcUUGAACUGCGCcagcaggaucgagGCGAc- -3'
miRNA:   3'- -GCGAGUGGU------------AGCUUGACGCG-------------CGCUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.