miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16323 3' -59.7 NC_004084.1 + 44605 0.66 0.550246
Target:  5'- -aUCGCCGAGuGggccgaucgCCUCGGUCGCGaccaaccggaCGCg -3'
miRNA:   3'- gcGGCGGCUC-Ca--------GGAGCUAGUGC----------GCG- -5'
16323 3' -59.7 NC_004084.1 + 47002 0.66 0.550246
Target:  5'- aCGaCCG-CGAGuUCCUCGAggACGuCGCg -3'
miRNA:   3'- -GC-GGCgGCUCcAGGAGCUagUGC-GCG- -5'
16323 3' -59.7 NC_004084.1 + 683 0.66 0.550246
Target:  5'- gGCuuCGUCGAcGUCCUCGAgcggugCACGCa- -3'
miRNA:   3'- gCG--GCGGCUcCAGGAGCUa-----GUGCGcg -5'
16323 3' -59.7 NC_004084.1 + 30114 0.66 0.544098
Target:  5'- aCGUCGCUGGGGagcgggccggggaacUgCUCGAUCuccauucCGUGCg -3'
miRNA:   3'- -GCGGCGGCUCC---------------AgGAGCUAGu------GCGCG- -5'
16323 3' -59.7 NC_004084.1 + 54839 0.66 0.540012
Target:  5'- -aCgGUCGAGGgaCCUUGAuUCGCGCGUu -3'
miRNA:   3'- gcGgCGGCUCCa-GGAGCU-AGUGCGCG- -5'
16323 3' -59.7 NC_004084.1 + 36242 0.66 0.540012
Target:  5'- uCGCCuaccggGUCGAcGUCCUCGAgugCGCcgagGCGCu -3'
miRNA:   3'- -GCGG------CGGCUcCAGGAGCUa--GUG----CGCG- -5'
16323 3' -59.7 NC_004084.1 + 35140 0.66 0.540012
Target:  5'- gGgCGUCGAGGUCCUCGGggUACa--- -3'
miRNA:   3'- gCgGCGGCUCCAGGAGCUa-GUGcgcg -5'
16323 3' -59.7 NC_004084.1 + 26051 0.66 0.540012
Target:  5'- aGCUGCUugaaGAGaagCUCGAUCGCGCGg -3'
miRNA:   3'- gCGGCGG----CUCcagGAGCUAGUGCGCg -5'
16323 3' -59.7 NC_004084.1 + 1753 0.66 0.529844
Target:  5'- cCGCCGCCGAaGUaCCgagCGGggcCugGCGa -3'
miRNA:   3'- -GCGGCGGCUcCA-GGa--GCUa--GugCGCg -5'
16323 3' -59.7 NC_004084.1 + 47948 0.66 0.529844
Target:  5'- gGCCGuCCGucAGGccgUCCUgGAUCGCcuCGCg -3'
miRNA:   3'- gCGGC-GGC--UCC---AGGAgCUAGUGc-GCG- -5'
16323 3' -59.7 NC_004084.1 + 3349 0.66 0.529844
Target:  5'- -aCCGCCGAuuGGUCgUCGA-CGUGCGUc -3'
miRNA:   3'- gcGGCGGCU--CCAGgAGCUaGUGCGCG- -5'
16323 3' -59.7 NC_004084.1 + 28091 0.66 0.519746
Target:  5'- uCGCCGacggucaacgguUCGGGGUgcgCCUCGAcgaGCGCGUc -3'
miRNA:   3'- -GCGGC------------GGCUCCA---GGAGCUag-UGCGCG- -5'
16323 3' -59.7 NC_004084.1 + 18885 0.66 0.519746
Target:  5'- gGCCaucaCGAGGagaUCCUCGAggACGuCGCg -3'
miRNA:   3'- gCGGcg--GCUCC---AGGAGCUagUGC-GCG- -5'
16323 3' -59.7 NC_004084.1 + 23286 0.66 0.519746
Target:  5'- aGCgGCCGAccaGUCC-CGAgcgaGCGCGUg -3'
miRNA:   3'- gCGgCGGCUc--CAGGaGCUag--UGCGCG- -5'
16323 3' -59.7 NC_004084.1 + 37097 0.66 0.509725
Target:  5'- cCGaCC-UCGAGGUcugCCUCGAUgACGcCGCu -3'
miRNA:   3'- -GC-GGcGGCUCCA---GGAGCUAgUGC-GCG- -5'
16323 3' -59.7 NC_004084.1 + 56400 0.66 0.509725
Target:  5'- gCGCCcaGCUGGGaGUCgaaCUCGAUCGCGUc- -3'
miRNA:   3'- -GCGG--CGGCUC-CAG---GAGCUAGUGCGcg -5'
16323 3' -59.7 NC_004084.1 + 16123 0.67 0.499786
Target:  5'- uCGUCGCCGAucgugaacgGGUgaCCgcggUGGUCGCGCuGCu -3'
miRNA:   3'- -GCGGCGGCU---------CCA--GGa---GCUAGUGCG-CG- -5'
16323 3' -59.7 NC_004084.1 + 48970 0.67 0.499786
Target:  5'- uGCCGCCGAcuacgGcGUCCcgcagcacCGAgagCGCGUGCu -3'
miRNA:   3'- gCGGCGGCU-----C-CAGGa-------GCUa--GUGCGCG- -5'
16323 3' -59.7 NC_004084.1 + 28389 0.67 0.499786
Target:  5'- gGCCcCCGcGaGaCCUCGAUCGgCGCGUa -3'
miRNA:   3'- gCGGcGGCuC-CaGGAGCUAGU-GCGCG- -5'
16323 3' -59.7 NC_004084.1 + 30027 0.67 0.498797
Target:  5'- gCGCCGaUCGAGGUCUcgCGGgggccgcUCGCGuCGUu -3'
miRNA:   3'- -GCGGC-GGCUCCAGGa-GCU-------AGUGC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.