miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16332 5' -52.9 NC_004084.1 + 35691 0.66 0.88141
Target:  5'- cCGcuGGGCGGacuUCGUCGGGucgcUCGCCg -3'
miRNA:   3'- -GCucUCUGCU---GGUAGCCCuau-AGCGG- -5'
16332 5' -52.9 NC_004084.1 + 1548 0.69 0.712614
Target:  5'- cCGAGGcGACGGCCGUCGagccGGAgccCGCg -3'
miRNA:   3'- -GCUCU-CUGCUGGUAGC----CCUauaGCGg -5'
16332 5' -52.9 NC_004084.1 + 8377 0.7 0.654091
Target:  5'- uGAGGGACGAgCAUCuucgacuuucgucGGAUGUUGCUc -3'
miRNA:   3'- gCUCUCUGCUgGUAGc------------CCUAUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 16482 1.13 0.001239
Target:  5'- uCGAGAGACGACCAUCGGGAUAUCGCCa -3'
miRNA:   3'- -GCUCUCUGCUGGUAGCCCUAUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 4960 0.67 0.840694
Target:  5'- cCGGGAGACGAcgacCCA-CGaGGAgAUCGgCg -3'
miRNA:   3'- -GCUCUCUGCU----GGUaGC-CCUaUAGCgG- -5'
16332 5' -52.9 NC_004084.1 + 33219 0.67 0.840694
Target:  5'- -cAGAGGCGGCCGagCGGGccGUCcCCu -3'
miRNA:   3'- gcUCUCUGCUGGUa-GCCCuaUAGcGG- -5'
16332 5' -52.9 NC_004084.1 + 34607 0.67 0.826469
Target:  5'- -uGGAGACGcucaccgcguccauuGCCGUCuGGGA-GUCGCUc -3'
miRNA:   3'- gcUCUCUGC---------------UGGUAG-CCCUaUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 867 0.67 0.82283
Target:  5'- aGAGucagucgucGACGucGCCGUCGGaaucGGUAUCGCUg -3'
miRNA:   3'- gCUCu--------CUGC--UGGUAGCC----CUAUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 29587 0.68 0.784795
Target:  5'- cCGAGAcGGCGaACCgGUCGcGAUGcUCGCCc -3'
miRNA:   3'- -GCUCU-CUGC-UGG-UAGCcCUAU-AGCGG- -5'
16332 5' -52.9 NC_004084.1 + 35901 0.69 0.712614
Target:  5'- -cGGAGGCGAUCGUCGucgaGGAUGaCGCg -3'
miRNA:   3'- gcUCUCUGCUGGUAGC----CCUAUaGCGg -5'
16332 5' -52.9 NC_004084.1 + 57122 0.68 0.774866
Target:  5'- uCGAG-GACGuCC-UCGG--UGUCGCCg -3'
miRNA:   3'- -GCUCuCUGCuGGuAGCCcuAUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 9937 0.68 0.802263
Target:  5'- aGuGAGACGugCGUCGGcGGgucggaguaGCCa -3'
miRNA:   3'- gCuCUCUGCugGUAGCC-CUauag-----CGG- -5'
16332 5' -52.9 NC_004084.1 + 26171 0.66 0.88141
Target:  5'- uCGAcGAGAacguagucccaaCGACCGUCGGc--GUCGUCg -3'
miRNA:   3'- -GCU-CUCU------------GCUGGUAGCCcuaUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 48895 0.68 0.764791
Target:  5'- -cAGuGAUGACCGUCGGucgGUCgGCCa -3'
miRNA:   3'- gcUCuCUGCUGGUAGCCcuaUAG-CGG- -5'
16332 5' -52.9 NC_004084.1 + 38387 0.66 0.88141
Target:  5'- aCGAGAcGCGAUCGUCGuccucGAg--CGCCg -3'
miRNA:   3'- -GCUCUcUGCUGGUAGCc----CUauaGCGG- -5'
16332 5' -52.9 NC_004084.1 + 22336 0.67 0.813594
Target:  5'- gGAGAcGGCGACCucGUCGcGGuccUCGUCg -3'
miRNA:   3'- gCUCU-CUGCUGG--UAGC-CCuauAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 17049 0.68 0.763776
Target:  5'- uCGAGAguucguaaucgucGACGACgAUUucGGAUAUCGCUg -3'
miRNA:   3'- -GCUCU-------------CUGCUGgUAGc-CCUAUAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 5713 0.7 0.669387
Target:  5'- uCGAG-GACGucgcucggGCCGagguccucgaUCGGGAUgAUCGCCu -3'
miRNA:   3'- -GCUCuCUGC--------UGGU----------AGCCCUA-UAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 33006 0.66 0.86584
Target:  5'- uCGGGAuGCGG--AUCGGGGagAUCGCCc -3'
miRNA:   3'- -GCUCUcUGCUggUAGCCCUa-UAGCGG- -5'
16332 5' -52.9 NC_004084.1 + 29388 0.67 0.840694
Target:  5'- aCGAGcaacggucGGGCGGCCAcuccUGGGGcGUCGCg -3'
miRNA:   3'- -GCUC--------UCUGCUGGUa---GCCCUaUAGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.