Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16346 | 3' | -51.7 | NC_004084.1 | + | 57467 | 0.66 | 0.930387 |
Target: 5'- aGGAUGcGGUccccggagUCGAacuUGUCGAgccagaggccgugguGCUCGUCGa -3' miRNA: 3'- -CCUAC-UCA--------AGCU---GCAGCU---------------CGAGCAGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 18767 | 0.66 | 0.928144 |
Target: 5'- uGGAgcgcgcGAGUuccUCGGCGUCGcGUacgaucgacUCGUCGa -3' miRNA: 3'- -CCUa-----CUCA---AGCUGCAGCuCG---------AGCAGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 3 | 0.66 | 0.922343 |
Target: 5'- uGGUGAGUcgggggucuUCGAaGUCGAGgUCGUg- -3' miRNA: 3'- cCUACUCA---------AGCUgCAGCUCgAGCAgc -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 1657 | 0.66 | 0.922343 |
Target: 5'- gGGGUGcucGUUcccCGACGUCGAguGCUUGUgGa -3' miRNA: 3'- -CCUACu--CAA---GCUGCAGCU--CGAGCAgC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 49302 | 0.66 | 0.916266 |
Target: 5'- cGGAUGuacacUGAgCGU-GAGCUCGUCGa -3' miRNA: 3'- -CCUACucaa-GCU-GCAgCUCGAGCAGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 1645 | 0.66 | 0.916266 |
Target: 5'- uGGcggGAGUacUCGcuCGUCaucauGGGCUCGUCGg -3' miRNA: 3'- -CCua-CUCA--AGCu-GCAG-----CUCGAGCAGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 1971 | 0.67 | 0.903287 |
Target: 5'- ---aGAGcgCGcCGUCGAGaUCGUCGu -3' miRNA: 3'- ccuaCUCaaGCuGCAGCUCgAGCAGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 8236 | 0.67 | 0.889228 |
Target: 5'- ---aGAGggCGACGUCGAGacgaUCGaCGc -3' miRNA: 3'- ccuaCUCaaGCUGCAGCUCg---AGCaGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 25995 | 0.67 | 0.889228 |
Target: 5'- -----cGUucgCGACGagugCGAGCUCGUCGa -3' miRNA: 3'- ccuacuCAa--GCUGCa---GCUCGAGCAGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 19010 | 0.67 | 0.881804 |
Target: 5'- -aGUGAGgacgaCGACGcCGAGCUCGa-- -3' miRNA: 3'- ccUACUCaa---GCUGCaGCUCGAGCagc -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 26306 | 0.67 | 0.874123 |
Target: 5'- uGGUGc--UCGACGacgagcugcUCGAGCUCGUCc -3' miRNA: 3'- cCUACucaAGCUGC---------AGCUCGAGCAGc -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 20107 | 0.68 | 0.866191 |
Target: 5'- ---cGAuaUCGACGUCacGCUCGUCGa -3' miRNA: 3'- ccuaCUcaAGCUGCAGcuCGAGCAGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 47645 | 0.68 | 0.866191 |
Target: 5'- ---cGAcUUCGGCGUCGAGgUCGgCGa -3' miRNA: 3'- ccuaCUcAAGCUGCAGCUCgAGCaGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 50143 | 0.68 | 0.858015 |
Target: 5'- cGGAUGAcgaggUCGuuGUCGAGgaUGUCGu -3' miRNA: 3'- -CCUACUca---AGCugCAGCUCgaGCAGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 17785 | 0.68 | 0.846174 |
Target: 5'- aGGUGAGUUCGGCGUCucacuaccgCGUCa -3' miRNA: 3'- cCUACUCAAGCUGCAGcucga----GCAGc -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 17840 | 0.68 | 0.840963 |
Target: 5'- ---cGAGUUCGAUGgUGAcCUCGUCGc -3' miRNA: 3'- ccuaCUCAAGCUGCaGCUcGAGCAGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 52642 | 0.68 | 0.840963 |
Target: 5'- aGGGUGAGUgccUCGGCugcggCGAGacggagaUCGUCGu -3' miRNA: 3'- -CCUACUCA---AGCUGca---GCUCg------AGCAGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 22086 | 0.68 | 0.832103 |
Target: 5'- uGGUGAGUUCGACGaagucgucaCGGGCaUCGaUCa -3' miRNA: 3'- cCUACUCAAGCUGCa--------GCUCG-AGC-AGc -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 21597 | 0.68 | 0.832103 |
Target: 5'- -----cGUUCGAucggcguuCGUCGAcGCUCGUCGa -3' miRNA: 3'- ccuacuCAAGCU--------GCAGCU-CGAGCAGC- -5' |
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16346 | 3' | -51.7 | NC_004084.1 | + | 19595 | 0.68 | 0.832103 |
Target: 5'- aGGAcgacGAGUUCGugGUCaAGCacgaGUCGg -3' miRNA: 3'- -CCUa---CUCAAGCugCAGcUCGag--CAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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