Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16346 | 5' | -55.1 | NC_004084.1 | + | 48719 | 0.66 | 0.774859 |
Target: 5'- cGUCGGCCAaCUcacCGCGGUcucCGGCGggCCa -3' miRNA: 3'- -CAGCUGGUaGA---GCGUCA---GCUGCa-GGa -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 17257 | 0.66 | 0.774859 |
Target: 5'- -gCGGCCGg--UGCAGUCGGCGaugCCc -3' miRNA: 3'- caGCUGGUagaGCGUCAGCUGCa--GGa -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 34930 | 0.66 | 0.774859 |
Target: 5'- -cCGGCCAUCUCGUcacgGGCGUUCg -3' miRNA: 3'- caGCUGGUAGAGCGucagCUGCAGGa -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 19079 | 0.66 | 0.774859 |
Target: 5'- -gCGGCCGUCUac--GUCGACGUCg- -3' miRNA: 3'- caGCUGGUAGAgcguCAGCUGCAGga -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 27452 | 0.66 | 0.764827 |
Target: 5'- aUCGAuCCGgagCgggaGaCGGUCGGCGUCCUc -3' miRNA: 3'- cAGCU-GGUa--Gag--C-GUCAGCUGCAGGA- -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 16259 | 0.66 | 0.764827 |
Target: 5'- cUCGACgGUUcUGCAGUCGAgugcaGUCCc -3' miRNA: 3'- cAGCUGgUAGaGCGUCAGCUg----CAGGa -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 35826 | 0.66 | 0.764827 |
Target: 5'- -aCcACCGUCUCGuCGG-CGACGUCg- -3' miRNA: 3'- caGcUGGUAGAGC-GUCaGCUGCAGga -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 8915 | 0.66 | 0.764827 |
Target: 5'- -cCGACCGgaUCG-AGUCGACGUaCCg -3' miRNA: 3'- caGCUGGUagAGCgUCAGCUGCA-GGa -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 40581 | 0.66 | 0.764827 |
Target: 5'- cUCGGCCGUCUCG-AGcUCGGCuUCUc -3' miRNA: 3'- cAGCUGGUAGAGCgUC-AGCUGcAGGa -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 5160 | 0.66 | 0.75466 |
Target: 5'- -cCGGCCcgAUCUCGUcgccGUCGACGaCCg -3' miRNA: 3'- caGCUGG--UAGAGCGu---CAGCUGCaGGa -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 36154 | 0.66 | 0.75466 |
Target: 5'- cUCGACUggaUCGaC-GUCGACGUCCg -3' miRNA: 3'- cAGCUGGuagAGC-GuCAGCUGCAGGa -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 1416 | 0.66 | 0.75466 |
Target: 5'- cGUCG-CCAuUCUCgGC-GUCGcCGUCCUc -3' miRNA: 3'- -CAGCuGGU-AGAG-CGuCAGCuGCAGGA- -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 48405 | 0.66 | 0.753637 |
Target: 5'- aUCGuggccGCCAUCUCGgAgaucuucGUCGACGUCg- -3' miRNA: 3'- cAGC-----UGGUAGAGCgU-------CAGCUGCAGga -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 20444 | 0.66 | 0.744371 |
Target: 5'- aGUCGucaACCGUCUC--AGUCGGCGaCCg -3' miRNA: 3'- -CAGC---UGGUAGAGcgUCAGCUGCaGGa -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 9237 | 0.66 | 0.744371 |
Target: 5'- cUCGAUCAgggcguccagcgUCUCGgGGUCGuCGUUCg -3' miRNA: 3'- cAGCUGGU------------AGAGCgUCAGCuGCAGGa -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 57105 | 0.66 | 0.744371 |
Target: 5'- --aGACCGcCUCGaucCAGUCGAggaCGUCCUc -3' miRNA: 3'- cagCUGGUaGAGC---GUCAGCU---GCAGGA- -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 18247 | 0.66 | 0.738143 |
Target: 5'- aGUUGGCCAUCcCGaugacgucuucgaacCGGUCGACGUUg- -3' miRNA: 3'- -CAGCUGGUAGaGC---------------GUCAGCUGCAGga -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 29768 | 0.66 | 0.73397 |
Target: 5'- -aUGACCGUCcugcaUCGCgacgGGUCGGCGUacaCCUa -3' miRNA: 3'- caGCUGGUAG-----AGCG----UCAGCUGCA---GGA- -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 51134 | 0.66 | 0.73397 |
Target: 5'- uGUCGuCCuugcucauggugAUCUCGguGUCGGugucgcucuCGUCCUg -3' miRNA: 3'- -CAGCuGG------------UAGAGCguCAGCU---------GCAGGA- -5' |
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16346 | 5' | -55.1 | NC_004084.1 | + | 32048 | 0.66 | 0.723469 |
Target: 5'- -aCGACgAUCccgaacgcgacUCGCuGuUCGACGUCCUc -3' miRNA: 3'- caGCUGgUAG-----------AGCGuC-AGCUGCAGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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