Results 1 - 20 of 68 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16369 | 3' | -54.4 | NC_004084.1 | + | 22183 | 0.65 | 0.78691 |
Target: 5'- aUUCGCCAAUucgucugcgucguaGaGgUCGA-CCUGAACGUu -3' miRNA: 3'- -AAGCGGUUG--------------C-CgAGCUaGGACUUGCG- -5' |
|||||||
16369 | 3' | -54.4 | NC_004084.1 | + | 16862 | 0.68 | 0.673742 |
Target: 5'- -aCGCC-GCGGCgaaCGGUgCgagGAGCGCc -3' miRNA: 3'- aaGCGGuUGCCGa--GCUAgGa--CUUGCG- -5' |
|||||||
16369 | 3' | -54.4 | NC_004084.1 | + | 4773 | 0.68 | 0.651661 |
Target: 5'- cUCGU---CGGCUCGGUCCUcGACGa -3' miRNA: 3'- aAGCGguuGCCGAGCUAGGAcUUGCg -5' |
|||||||
16369 | 3' | -54.4 | NC_004084.1 | + | 27355 | 0.74 | 0.312133 |
Target: 5'- aUCGUCAGCGGUUCGGaCCgcgagaucucgucGAGCGCg -3' miRNA: 3'- aAGCGGUUGCCGAGCUaGGa------------CUUGCG- -5' |
|||||||
16369 | 3' | -54.4 | NC_004084.1 | + | 43683 | 0.66 | 0.769813 |
Target: 5'- --gGCCAGCGGCcguacucgCGAUCCcacUGGAggaucCGCg -3' miRNA: 3'- aagCGGUUGCCGa-------GCUAGG---ACUU-----GCG- -5' |
|||||||
16369 | 3' | -54.4 | NC_004084.1 | + | 53382 | 0.66 | 0.768794 |
Target: 5'- aUCGCCGggucaacguacucGCGGCUgGucgCCaGGACGUc -3' miRNA: 3'- aAGCGGU-------------UGCCGAgCua-GGaCUUGCG- -5' |
|||||||
16369 | 3' | -54.4 | NC_004084.1 | + | 44035 | 0.66 | 0.759559 |
Target: 5'- cUCGCCcucccaGGC-CGccUCCUGAGCGUc -3' miRNA: 3'- aAGCGGuug---CCGaGCu-AGGACUUGCG- -5' |
|||||||
16369 | 3' | -54.4 | NC_004084.1 | + | 52042 | 0.66 | 0.759559 |
Target: 5'- gUCGCCGugGaGCggGAugUCCUGGAccuCGCc -3' miRNA: 3'- aAGCGGUugC-CGagCU--AGGACUU---GCG- -5' |
|||||||
16369 | 3' | -54.4 | NC_004084.1 | + | 57082 | 0.67 | 0.728047 |
Target: 5'- gUCGCCAuucuCGGCgUCGccGUCCUcGGcCGCc -3' miRNA: 3'- aAGCGGUu---GCCG-AGC--UAGGA-CUuGCG- -5' |
|||||||
16369 | 3' | -54.4 | NC_004084.1 | + | 45550 | 0.67 | 0.684727 |
Target: 5'- -aCGCCGAacgaggcuCGGCuUCGAUCCgcGGGCGg -3' miRNA: 3'- aaGCGGUU--------GCCG-AGCUAGGa-CUUGCg -5' |
|||||||
16369 | 3' | -54.4 | NC_004084.1 | + | 52546 | 0.67 | 0.706535 |
Target: 5'- cUUCGCCu-CGGCcaUCGA--CUGAGCGUu -3' miRNA: 3'- -AAGCGGuuGCCG--AGCUagGACUUGCG- -5' |
|||||||
16369 | 3' | -54.4 | NC_004084.1 | + | 49210 | 0.67 | 0.728047 |
Target: 5'- gUCGCCuggucCGGCUCcuucaGAUCgUG-ACGCu -3' miRNA: 3'- aAGCGGuu---GCCGAG-----CUAGgACuUGCG- -5' |
|||||||
16369 | 3' | -54.4 | NC_004084.1 | + | 43803 | 0.66 | 0.779924 |
Target: 5'- aUUgGCCcaacuAAUGGCUCGAagCUGAuccacuucgucgACGCg -3' miRNA: 3'- -AAgCGG-----UUGCCGAGCUagGACU------------UGCG- -5' |
|||||||
16369 | 3' | -54.4 | NC_004084.1 | + | 20293 | 0.67 | 0.706535 |
Target: 5'- -aCGUCGACGuGCUUGcgCCgGAAUGUu -3' miRNA: 3'- aaGCGGUUGC-CGAGCuaGGaCUUGCG- -5' |
|||||||
16369 | 3' | -54.4 | NC_004084.1 | + | 4549 | 0.66 | 0.779924 |
Target: 5'- cUUCGCCAGCucgaaCUCGAUCgUccagucGGGCGCg -3' miRNA: 3'- -AAGCGGUUGcc---GAGCUAGgA------CUUGCG- -5' |
|||||||
16369 | 3' | -54.4 | NC_004084.1 | + | 7981 | 0.66 | 0.738664 |
Target: 5'- -gCGCCGACuGuCUCGGUUCgGAuCGCg -3' miRNA: 3'- aaGCGGUUGcC-GAGCUAGGaCUuGCG- -5' |
|||||||
16369 | 3' | -54.4 | NC_004084.1 | + | 22258 | 0.67 | 0.684727 |
Target: 5'- cUCGCCuacCGGgUCGAcgUCCUcGAguGCGCc -3' miRNA: 3'- aAGCGGuu-GCCgAGCU--AGGA-CU--UGCG- -5' |
|||||||
16369 | 3' | -54.4 | NC_004084.1 | + | 22391 | 0.68 | 0.673742 |
Target: 5'- cUUCGuCCGGCGGCguaUCGucaucgCC-GAACGCg -3' miRNA: 3'- -AAGC-GGUUGCCG---AGCua----GGaCUUGCG- -5' |
|||||||
16369 | 3' | -54.4 | NC_004084.1 | + | 23389 | 0.66 | 0.769813 |
Target: 5'- -aCGCCucagcguACaGUucuugUCGAUCCUGGGCGUc -3' miRNA: 3'- aaGCGGu------UGcCG-----AGCUAGGACUUGCG- -5' |
|||||||
16369 | 3' | -54.4 | NC_004084.1 | + | 22039 | 0.66 | 0.759559 |
Target: 5'- gUCGaucuCGGCGGagacgUCG-UCCUGGACGCc -3' miRNA: 3'- aAGCg---GUUGCCg----AGCuAGGACUUGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home