Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16407 | 3' | -52.8 | NC_004084.1 | + | 22561 | 0.66 | 0.893752 |
Target: 5'- uUCGAUGUUcgacUCGGcguucgGCCGAuCGGCGUCu -3' miRNA: 3'- -AGCUACGAc---AGCUa-----UGGCU-GCUGCGG- -5' |
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16407 | 3' | -52.8 | NC_004084.1 | + | 12208 | 0.66 | 0.893752 |
Target: 5'- aUGAUGaucGUCGAcgcauCCGACGAcgaucuCGCCg -3' miRNA: 3'- aGCUACga-CAGCUau---GGCUGCU------GCGG- -5' |
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16407 | 3' | -52.8 | NC_004084.1 | + | 21944 | 0.66 | 0.893752 |
Target: 5'- gUUGAagUGCggGUCGAgaucucCCgGACGACGCg -3' miRNA: 3'- -AGCU--ACGa-CAGCUau----GG-CUGCUGCGg -5' |
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16407 | 3' | -52.8 | NC_004084.1 | + | 52931 | 0.66 | 0.893752 |
Target: 5'- gUCGAcUGCga-CGAUcugGCCGuCGGCGUCg -3' miRNA: 3'- -AGCU-ACGacaGCUA---UGGCuGCUGCGG- -5' |
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16407 | 3' | -52.8 | NC_004084.1 | + | 24777 | 0.66 | 0.893039 |
Target: 5'- aUCGAcacUGCUGUCGAugauccccucucgUACCG-CGAUuaCc -3' miRNA: 3'- -AGCU---ACGACAGCU-------------AUGGCuGCUGcgG- -5' |
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16407 | 3' | -52.8 | NC_004084.1 | + | 27195 | 0.66 | 0.886512 |
Target: 5'- gCGAcGCUGaaugcguaccUCGAgguuCgCGACGACGUCg -3' miRNA: 3'- aGCUaCGAC----------AGCUau--G-GCUGCUGCGG- -5' |
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16407 | 3' | -52.8 | NC_004084.1 | + | 40935 | 0.66 | 0.886512 |
Target: 5'- aCGAUGUcuUCGAUGgUGACuGugGUCa -3' miRNA: 3'- aGCUACGacAGCUAUgGCUG-CugCGG- -5' |
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16407 | 3' | -52.8 | NC_004084.1 | + | 29318 | 0.66 | 0.886512 |
Target: 5'- aCGAugUGCUGgauGAgcaucUACCgcggcGACGACGCCc -3' miRNA: 3'- aGCU--ACGACag-CU-----AUGG-----CUGCUGCGG- -5' |
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16407 | 3' | -52.8 | NC_004084.1 | + | 13452 | 0.66 | 0.886512 |
Target: 5'- gUGAUGCgGUCcacuCgCGACGaACGCCg -3' miRNA: 3'- aGCUACGaCAGcuauG-GCUGC-UGCGG- -5' |
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16407 | 3' | -52.8 | NC_004084.1 | + | 21982 | 0.66 | 0.893752 |
Target: 5'- aCGGUGCaGaCGGcgUACguCGACGACGCg -3' miRNA: 3'- aGCUACGaCaGCU--AUG--GCUGCUGCGg -5' |
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16407 | 3' | -52.8 | NC_004084.1 | + | 15571 | 0.66 | 0.891607 |
Target: 5'- gUCGAUGCgcuagcggcaucaaUGUCaGAUGCCacguuccCGACGCa -3' miRNA: 3'- -AGCUACG--------------ACAG-CUAUGGcu-----GCUGCGg -5' |
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16407 | 3' | -52.8 | NC_004084.1 | + | 36528 | 0.66 | 0.886512 |
Target: 5'- cCGcgGcCUGUugaaguuccucgCGAUGCgGAUGACGCa -3' miRNA: 3'- aGCuaC-GACA------------GCUAUGgCUGCUGCGg -5' |
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16407 | 3' | -52.8 | NC_004084.1 | + | 12937 | 0.66 | 0.879013 |
Target: 5'- -aGAcGCUGaUCGAcGCCGAaCGAgGCUc -3' miRNA: 3'- agCUaCGAC-AGCUaUGGCU-GCUgCGG- -5' |
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16407 | 3' | -52.8 | NC_004084.1 | + | 45733 | 0.66 | 0.86245 |
Target: 5'- gCGGUGCUgGUCGGcUACgaaccaguccgcuCGAUcggGACGCCg -3' miRNA: 3'- aGCUACGA-CAGCU-AUG-------------GCUG---CUGCGG- -5' |
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16407 | 3' | -52.8 | NC_004084.1 | + | 28406 | 0.66 | 0.863264 |
Target: 5'- gUCGAUGCgaacgcugacGUCGucaccagcgACCaGGuCGACGCCg -3' miRNA: 3'- -AGCUACGa---------CAGCua-------UGG-CU-GCUGCGG- -5' |
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16407 | 3' | -52.8 | NC_004084.1 | + | 22408 | 0.66 | 0.871262 |
Target: 5'- aCGAUcacGCUucUCGGcuCCGACGACGCg -3' miRNA: 3'- aGCUA---CGAc-AGCUauGGCUGCUGCGg -5' |
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16407 | 3' | -52.8 | NC_004084.1 | + | 46691 | 0.66 | 0.871262 |
Target: 5'- uUCGA-GCacGUC---GCCGGCGACGUCu -3' miRNA: 3'- -AGCUaCGa-CAGcuaUGGCUGCUGCGG- -5' |
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16407 | 3' | -52.8 | NC_004084.1 | + | 8236 | 0.66 | 0.879013 |
Target: 5'- -aGAggGCgacGUCGAga-CGAuCGACGCCg -3' miRNA: 3'- agCUa-CGa--CAGCUaugGCU-GCUGCGG- -5' |
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16407 | 3' | -52.8 | NC_004084.1 | + | 12933 | 0.66 | 0.886512 |
Target: 5'- aCGAUGaCgacGUCuucgugACCGACGAuaCGCCa -3' miRNA: 3'- aGCUAC-Ga--CAGcua---UGGCUGCU--GCGG- -5' |
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16407 | 3' | -52.8 | NC_004084.1 | + | 58079 | 0.66 | 0.871262 |
Target: 5'- aCGgcGUUGUCGuUGCCGuccUGGuCGCCg -3' miRNA: 3'- aGCuaCGACAGCuAUGGCu--GCU-GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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