miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16407 3' -52.8 NC_004084.1 + 47031 0.67 0.837861
Target:  5'- aUCGAUGa---CGAUGCCGGgGAgUGCCc -3'
miRNA:   3'- -AGCUACgacaGCUAUGGCUgCU-GCGG- -5'
16407 3' -52.8 NC_004084.1 + 45512 0.68 0.771522
Target:  5'- cCGG-GCcgGUCGGccacuCCGAgGACGCCg -3'
miRNA:   3'- aGCUaCGa-CAGCUau---GGCUgCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 41313 0.68 0.781515
Target:  5'- gUCGAgGCUaUCGAUggaggGCagGACGAUGCCu -3'
miRNA:   3'- -AGCUaCGAcAGCUA-----UGg-CUGCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 6732 0.68 0.791354
Target:  5'- uUUGAUGCcGcCGAguCCGAUGACGgCg -3'
miRNA:   3'- -AGCUACGaCaGCUauGGCUGCUGCgG- -5'
16407 3' -52.8 NC_004084.1 + 22458 0.68 0.801027
Target:  5'- gUCGGgacuggucacgGCcGcCGAccCCGGCGACGCCg -3'
miRNA:   3'- -AGCUa----------CGaCaGCUauGGCUGCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 44283 0.67 0.810525
Target:  5'- gCGA-GgUGUCGGUAUgaACGACGCUg -3'
miRNA:   3'- aGCUaCgACAGCUAUGgcUGCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 9972 0.67 0.819837
Target:  5'- aUCGAcauCUGUucacCGuacugGCCGACGACGUCg -3'
miRNA:   3'- -AGCUac-GACA----GCua---UGGCUGCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 56983 0.67 0.828952
Target:  5'- gCGAaggagGCgGcCGAggaCGGCGACGCCg -3'
miRNA:   3'- aGCUa----CGaCaGCUaugGCUGCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 15784 0.67 0.837861
Target:  5'- cUCGAUGCacUUGAggACCGuucgGACGCCu -3'
miRNA:   3'- -AGCUACGacAGCUa-UGGCug--CUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 3125 0.68 0.761386
Target:  5'- aCGggGCUGggaUCGAUacgcaGCUGACGAucuacaCGCCg -3'
miRNA:   3'- aGCuaCGAC---AGCUA-----UGGCUGCU------GCGG- -5'
16407 3' -52.8 NC_004084.1 + 3821 0.7 0.68738
Target:  5'- cUCGAUccaGUcuucGUCGAcGCCGACGACGgCu -3'
miRNA:   3'- -AGCUA---CGa---CAGCUaUGGCUGCUGCgG- -5'
16407 3' -52.8 NC_004084.1 + 47644 0.71 0.64368
Target:  5'- cCGAcuucgGC-GUCGAggUCGGCGACGCCc -3'
miRNA:   3'- aGCUa----CGaCAGCUauGGCUGCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 37324 0.77 0.327735
Target:  5'- aCGAcGCUGaacgcuucggCGAUcCCGACGACGCCc -3'
miRNA:   3'- aGCUaCGACa---------GCUAuGGCUGCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 11897 0.75 0.421023
Target:  5'- uUCGAUGCcGagaucgucaucaacUCGGcgACCGGCGACGUCg -3'
miRNA:   3'- -AGCUACGaC--------------AGCUa-UGGCUGCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 21758 0.73 0.479859
Target:  5'- aUCGAUGCUGcCGAUgucgagaucgaggaGCCGuACGAuCGCg -3'
miRNA:   3'- -AGCUACGACaGCUA--------------UGGC-UGCU-GCGg -5'
16407 3' -52.8 NC_004084.1 + 17152 0.73 0.503463
Target:  5'- cUGAUGggGaCGAUcGCCGGCGACGUCg -3'
miRNA:   3'- aGCUACgaCaGCUA-UGGCUGCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 24290 0.73 0.503463
Target:  5'- aUCGAgGUUGUUGAUuCCGACGAUcCCu -3'
miRNA:   3'- -AGCUaCGACAGCUAuGGCUGCUGcGG- -5'
16407 3' -52.8 NC_004084.1 + 2280 0.72 0.578
Target:  5'- aUGggGCUgGUCGAcGCCGACGACaCUg -3'
miRNA:   3'- aGCuaCGA-CAGCUaUGGCUGCUGcGG- -5'
16407 3' -52.8 NC_004084.1 + 43391 0.71 0.610758
Target:  5'- cUCGAgugGCcGUCGAcGCuCGACGA-GCCg -3'
miRNA:   3'- -AGCUa--CGaCAGCUaUG-GCUGCUgCGG- -5'
16407 3' -52.8 NC_004084.1 + 40443 0.71 0.621726
Target:  5'- aUCGAgGCcGagggCGAcACCGACGACGUCc -3'
miRNA:   3'- -AGCUaCGaCa---GCUaUGGCUGCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.