miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16407 3' -52.8 NC_004084.1 + 20057 1.14 0.001144
Target:  5'- gUCGAUGCUGUCGAUACCGACGACGCCg -3'
miRNA:   3'- -AGCUACGACAGCUAUGGCUGCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 29477 0.77 0.32456
Target:  5'- aUCGAcGCUGUCGAcgcgcuccccgagGCCGACGuCGCUc -3'
miRNA:   3'- -AGCUaCGACAGCUa------------UGGCUGCuGCGG- -5'
16407 3' -52.8 NC_004084.1 + 37324 0.77 0.327735
Target:  5'- aCGAcGCUGaacgcuucggCGAUcCCGACGACGCCc -3'
miRNA:   3'- aGCUaCGACa---------GCUAuGGCUGCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 20534 0.75 0.408856
Target:  5'- gUCuGUGCUGUCGAUGCCcgaucggaaugaggaGACGG-GCCa -3'
miRNA:   3'- -AGcUACGACAGCUAUGG---------------CUGCUgCGG- -5'
16407 3' -52.8 NC_004084.1 + 11897 0.75 0.421023
Target:  5'- uUCGAUGCcGagaucgucaucaacUCGGcgACCGGCGACGUCg -3'
miRNA:   3'- -AGCUACGaC--------------AGCUa-UGGCUGCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 995 0.74 0.462765
Target:  5'- -aGGUGUUGuccaccUCGAgcucGCCGGCGACGUCg -3'
miRNA:   3'- agCUACGAC------AGCUa---UGGCUGCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 21758 0.73 0.479859
Target:  5'- aUCGAUGCUGcCGAUgucgagaucgaggaGCCGuACGAuCGCg -3'
miRNA:   3'- -AGCUACGACaGCUA--------------UGGC-UGCU-GCGg -5'
16407 3' -52.8 NC_004084.1 + 17152 0.73 0.503463
Target:  5'- cUGAUGggGaCGAUcGCCGGCGACGUCg -3'
miRNA:   3'- aGCUACgaCaGCUA-UGGCUGCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 24290 0.73 0.503463
Target:  5'- aUCGAgGUUGUUGAUuCCGACGAUcCCu -3'
miRNA:   3'- -AGCUaCGACAGCUAuGGCUGCUGcGG- -5'
16407 3' -52.8 NC_004084.1 + 30931 0.72 0.533915
Target:  5'- gUCGAUcGCUcgucgacGUCGAgcUCGAgGACGCCg -3'
miRNA:   3'- -AGCUA-CGA-------CAGCUauGGCUgCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 4293 0.72 0.578
Target:  5'- -aGGUGCUG--GAaGCCGACGGCGaCCu -3'
miRNA:   3'- agCUACGACagCUaUGGCUGCUGC-GG- -5'
16407 3' -52.8 NC_004084.1 + 2280 0.72 0.578
Target:  5'- aUGggGCUgGUCGAcGCCGACGACaCUg -3'
miRNA:   3'- aGCuaCGA-CAGCUaUGGCUGCUGcGG- -5'
16407 3' -52.8 NC_004084.1 + 39330 0.71 0.588886
Target:  5'- gCGGUGCUGaUCGAcgUCGACGuagacggccGCGCCc -3'
miRNA:   3'- aGCUACGAC-AGCUauGGCUGC---------UGCGG- -5'
16407 3' -52.8 NC_004084.1 + 38314 0.71 0.599808
Target:  5'- aCGA-GCgugacGUCGAUAUCGACGGuCGUCu -3'
miRNA:   3'- aGCUaCGa----CAGCUAUGGCUGCU-GCGG- -5'
16407 3' -52.8 NC_004084.1 + 23693 0.71 0.599808
Target:  5'- gCGA-GCUcaucgCGA-ACCGGCGACGCCc -3'
miRNA:   3'- aGCUaCGAca---GCUaUGGCUGCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 50397 0.71 0.599808
Target:  5'- cUCGGUGCugaUGUCGAucgUACCGGuCGAcaCGUCg -3'
miRNA:   3'- -AGCUACG---ACAGCU---AUGGCU-GCU--GCGG- -5'
16407 3' -52.8 NC_004084.1 + 26465 0.71 0.599808
Target:  5'- cCGA-GCUgGUUGAgcgcGCCGGCGACGUUg -3'
miRNA:   3'- aGCUaCGA-CAGCUa---UGGCUGCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 43391 0.71 0.610758
Target:  5'- cUCGAgugGCcGUCGAcGCuCGACGA-GCCg -3'
miRNA:   3'- -AGCUa--CGaCAGCUaUG-GCUGCUgCGG- -5'
16407 3' -52.8 NC_004084.1 + 1523 0.71 0.621726
Target:  5'- cCGAUGCacucgcgGUCGGUcuggACCGagGCGACgGCCg -3'
miRNA:   3'- aGCUACGa------CAGCUA----UGGC--UGCUG-CGG- -5'
16407 3' -52.8 NC_004084.1 + 40443 0.71 0.621726
Target:  5'- aUCGAgGCcGagggCGAcACCGACGACGUCc -3'
miRNA:   3'- -AGCUaCGaCa---GCUaUGGCUGCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.