miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16407 3' -52.8 NC_004084.1 + 576 0.68 0.770515
Target:  5'- gCGAUGUcGUCGAUguGCUcuucgguGAgGACGCCc -3'
miRNA:   3'- aGCUACGaCAGCUA--UGG-------CUgCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 995 0.74 0.462765
Target:  5'- -aGGUGUUGuccaccUCGAgcucGCCGGCGACGUCg -3'
miRNA:   3'- agCUACGAC------AGCUa---UGGCUGCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 1523 0.71 0.621726
Target:  5'- cCGAUGCacucgcgGUCGGUcuggACCGagGCGACgGCCg -3'
miRNA:   3'- aGCUACGa------CAGCUA----UGGC--UGCUG-CGG- -5'
16407 3' -52.8 NC_004084.1 + 2280 0.72 0.578
Target:  5'- aUGggGCUgGUCGAcGCCGACGACaCUg -3'
miRNA:   3'- aGCuaCGA-CAGCUaUGGCUGCUGcGG- -5'
16407 3' -52.8 NC_004084.1 + 3125 0.68 0.761386
Target:  5'- aCGggGCUGggaUCGAUacgcaGCUGACGAucuacaCGCCg -3'
miRNA:   3'- aGCuaCGAC---AGCUA-----UGGCUGCU------GCGG- -5'
16407 3' -52.8 NC_004084.1 + 3821 0.7 0.68738
Target:  5'- cUCGAUccaGUcuucGUCGAcGCCGACGACGgCu -3'
miRNA:   3'- -AGCUA---CGa---CAGCUaUGGCUGCUGCgG- -5'
16407 3' -52.8 NC_004084.1 + 4099 0.68 0.761386
Target:  5'- cUCGGUGCagcgucucgaUGUCGAU-CaCGACGuCGUCu -3'
miRNA:   3'- -AGCUACG----------ACAGCUAuG-GCUGCuGCGG- -5'
16407 3' -52.8 NC_004084.1 + 4293 0.72 0.578
Target:  5'- -aGGUGCUG--GAaGCCGACGGCGaCCu -3'
miRNA:   3'- agCUACGACagCUaUGGCUGCUGC-GG- -5'
16407 3' -52.8 NC_004084.1 + 5564 0.69 0.708956
Target:  5'- gUCGAcGUUGUCGAggucGCCaGCGccgaACGCCg -3'
miRNA:   3'- -AGCUaCGACAGCUa---UGGcUGC----UGCGG- -5'
16407 3' -52.8 NC_004084.1 + 6732 0.68 0.791354
Target:  5'- uUUGAUGCcGcCGAguCCGAUGACGgCg -3'
miRNA:   3'- -AGCUACGaCaGCUauGGCUGCUGCgG- -5'
16407 3' -52.8 NC_004084.1 + 8236 0.66 0.879013
Target:  5'- -aGAggGCgacGUCGAga-CGAuCGACGCCg -3'
miRNA:   3'- agCUa-CGa--CAGCUaugGCU-GCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 8598 0.66 0.871262
Target:  5'- uUCGAUGaacucGUCGAgGCUGuccuCGAgGCCg -3'
miRNA:   3'- -AGCUACga---CAGCUaUGGCu---GCUgCGG- -5'
16407 3' -52.8 NC_004084.1 + 9440 0.71 0.64368
Target:  5'- cUCGGUGCUG-CGGgacGCCGuaguCGGCGgCa -3'
miRNA:   3'- -AGCUACGACaGCUa--UGGCu---GCUGCgG- -5'
16407 3' -52.8 NC_004084.1 + 9972 0.67 0.819837
Target:  5'- aUCGAcauCUGUucacCGuacugGCCGACGACGUCg -3'
miRNA:   3'- -AGCUac-GACA----GCua---UGGCUGCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 10563 0.68 0.801027
Target:  5'- cUCGGggugGCUGUCGAUcgagacgggACCGGCcugguuGGCGUg -3'
miRNA:   3'- -AGCUa---CGACAGCUA---------UGGCUG------CUGCGg -5'
16407 3' -52.8 NC_004084.1 + 11897 0.75 0.421023
Target:  5'- uUCGAUGCcGagaucgucaucaacUCGGcgACCGGCGACGUCg -3'
miRNA:   3'- -AGCUACGaC--------------AGCUa-UGGCUGCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 12208 0.66 0.893752
Target:  5'- aUGAUGaucGUCGAcgcauCCGACGAcgaucuCGCCg -3'
miRNA:   3'- aGCUACga-CAGCUau---GGCUGCU------GCGG- -5'
16407 3' -52.8 NC_004084.1 + 12767 0.68 0.771522
Target:  5'- cUCGucGUUGUCGGcauCCGA-GACGCCg -3'
miRNA:   3'- -AGCuaCGACAGCUau-GGCUgCUGCGG- -5'
16407 3' -52.8 NC_004084.1 + 12933 0.66 0.886512
Target:  5'- aCGAUGaCgacGUCuucgugACCGACGAuaCGCCa -3'
miRNA:   3'- aGCUAC-Ga--CAGcua---UGGCUGCU--GCGG- -5'
16407 3' -52.8 NC_004084.1 + 12937 0.66 0.879013
Target:  5'- -aGAcGCUGaUCGAcGCCGAaCGAgGCUc -3'
miRNA:   3'- agCUaCGAC-AGCUaUGGCU-GCUgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.