miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16407 5' -51.4 NC_004084.1 + 54209 0.65 0.945799
Target:  5'- --cCGACCGUCagcggcucgagucgGAUcUCGACGUCggaGCGa -3'
miRNA:   3'- ucuGCUGGCAG--------------CUAuAGCUGCAG---UGC- -5'
16407 5' -51.4 NC_004084.1 + 38357 0.67 0.894174
Target:  5'- cGGCG-UCGUCGGUAUCGACa--GCa -3'
miRNA:   3'- uCUGCuGGCAGCUAUAGCUGcagUGc -5'
16407 5' -51.4 NC_004084.1 + 36155 0.67 0.886918
Target:  5'- --uCGACUGgaUCGAcGUCGACGUC-CGg -3'
miRNA:   3'- ucuGCUGGC--AGCUaUAGCUGCAGuGC- -5'
16407 5' -51.4 NC_004084.1 + 9095 0.78 0.359275
Target:  5'- cGcCGACCGggCGAUGUCGACGagcUCACGc -3'
miRNA:   3'- uCuGCUGGCa-GCUAUAGCUGC---AGUGC- -5'
16407 5' -51.4 NC_004084.1 + 11065 0.66 0.938901
Target:  5'- gGGGCGGCCGccgacgaacaugugcUUGAgGUCGGCGacgagaucgccguUCGCGg -3'
miRNA:   3'- -UCUGCUGGC---------------AGCUaUAGCUGC-------------AGUGC- -5'
16407 5' -51.4 NC_004084.1 + 11007 0.66 0.937353
Target:  5'- cGACGuCCuUCGGcuUCGuCGUCGCGc -3'
miRNA:   3'- uCUGCuGGcAGCUauAGCuGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 27568 0.66 0.936307
Target:  5'- uGACGAgCGggcCGcccaccucuuUCGACGUCGCGa -3'
miRNA:   3'- uCUGCUgGCa--GCuau-------AGCUGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 4968 0.66 0.932014
Target:  5'- cGACGACCcaCGAggagAUCGGCGggaccCACu -3'
miRNA:   3'- uCUGCUGGcaGCUa---UAGCUGCa----GUGc -5'
16407 5' -51.4 NC_004084.1 + 57125 0.66 0.920502
Target:  5'- aGGACGuCC-UCGGUGUCGcCGUCu-- -3'
miRNA:   3'- -UCUGCuGGcAGCUAUAGCuGCAGugc -5'
16407 5' -51.4 NC_004084.1 + 21768 0.67 0.901164
Target:  5'- cGGgGAUCGgCGGcAUCGACGUCGgGg -3'
miRNA:   3'- uCUgCUGGCaGCUaUAGCUGCAGUgC- -5'
16407 5' -51.4 NC_004084.1 + 49063 0.67 0.901164
Target:  5'- aAGAucgUGACCGUCGAcGUgCGACgGUCGgGa -3'
miRNA:   3'- -UCU---GCUGGCAGCUaUA-GCUG-CAGUgC- -5'
16407 5' -51.4 NC_004084.1 + 53595 0.66 0.92582
Target:  5'- cGACGAUCGgcgagcuUUGAUcUCGACGUUgACGa -3'
miRNA:   3'- uCUGCUGGC-------AGCUAuAGCUGCAG-UGC- -5'
16407 5' -51.4 NC_004084.1 + 39059 0.66 0.942417
Target:  5'- gGGACG-UUGUCGAUcagcagGUCGcUGUCGCGc -3'
miRNA:   3'- -UCUGCuGGCAGCUA------UAGCuGCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 23075 0.67 0.901164
Target:  5'- cGGCGACgCGaCGAgGUgGACGUCgGCGa -3'
miRNA:   3'- uCUGCUG-GCaGCUaUAgCUGCAG-UGC- -5'
16407 5' -51.4 NC_004084.1 + 30217 0.66 0.942417
Target:  5'- gAGACcauGACCGgaggCGAUGUccgcggCGACGUCGa- -3'
miRNA:   3'- -UCUG---CUGGCa---GCUAUA------GCUGCAGUgc -5'
16407 5' -51.4 NC_004084.1 + 47742 0.66 0.928677
Target:  5'- cGAUGACCGccauccgguuggcgCGAUccaucAUCGACGcCGCGu -3'
miRNA:   3'- uCUGCUGGCa-------------GCUA-----UAGCUGCaGUGC- -5'
16407 5' -51.4 NC_004084.1 + 4924 0.67 0.901164
Target:  5'- cGACGACU-UCGccGUCGACGUaCugGa -3'
miRNA:   3'- uCUGCUGGcAGCuaUAGCUGCA-GugC- -5'
16407 5' -51.4 NC_004084.1 + 15019 0.67 0.894174
Target:  5'- -uGCGGCuCGUCGAgcGUCGACGgcCACu -3'
miRNA:   3'- ucUGCUG-GCAGCUa-UAGCUGCa-GUGc -5'
16407 5' -51.4 NC_004084.1 + 32007 0.66 0.942417
Target:  5'- uGGAgGGCucgaauuaCGcCGAUAUCGAugcCGUCGCGu -3'
miRNA:   3'- -UCUgCUG--------GCaGCUAUAGCU---GCAGUGC- -5'
16407 5' -51.4 NC_004084.1 + 1970 0.66 0.937353
Target:  5'- gAGAgCGcGCCGUCGAgAUCGuCGUUccgACGg -3'
miRNA:   3'- -UCU-GC-UGGCAGCUaUAGCuGCAG---UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.