Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16441 | 3' | -47 | NC_004084.1 | + | 28709 | 0.66 | 0.991792 |
Target: 5'- cAGACGACGcgacucagccaGGACAGCGUccGCGAccgcGUCGc -3' miRNA: 3'- uUUUGUUGC-----------UCUGUUGCG--CGCU----UAGU- -5' |
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16441 | 3' | -47 | NC_004084.1 | + | 10371 | 0.66 | 0.991792 |
Target: 5'- cGAACGACGAGagucgagcagGCGAUcgaGCGCGAAg-- -3' miRNA: 3'- uUUUGUUGCUC----------UGUUG---CGCGCUUagu -5' |
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16441 | 3' | -47 | NC_004084.1 | + | 29540 | 0.66 | 0.990456 |
Target: 5'- --cGCGGCGAGAUcuCGCuGCGGAa-- -3' miRNA: 3'- uuuUGUUGCUCUGuuGCG-CGCUUagu -5' |
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16441 | 3' | -47 | NC_004084.1 | + | 19317 | 0.66 | 0.988956 |
Target: 5'- -cGACGACGAu-CGACGgGCGAcuGUCu -3' miRNA: 3'- uuUUGUUGCUcuGUUGCgCGCU--UAGu -5' |
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16441 | 3' | -47 | NC_004084.1 | + | 47391 | 0.66 | 0.988956 |
Target: 5'- -cGACGGCGAGcucCAGgGCGCGAc--- -3' miRNA: 3'- uuUUGUUGCUCu--GUUgCGCGCUuagu -5' |
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16441 | 3' | -47 | NC_004084.1 | + | 20903 | 0.66 | 0.988796 |
Target: 5'- --uACGACGAGGacaucauCGACGUcCGAAUCGa -3' miRNA: 3'- uuuUGUUGCUCU-------GUUGCGcGCUUAGU- -5' |
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16441 | 3' | -47 | NC_004084.1 | + | 26364 | 0.66 | 0.987278 |
Target: 5'- cGAACAGCGAGu---CGCGUucgGGAUCGu -3' miRNA: 3'- uUUUGUUGCUCuguuGCGCG---CUUAGU- -5' |
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16441 | 3' | -47 | NC_004084.1 | + | 24348 | 0.66 | 0.987278 |
Target: 5'- uGAGCAACGcGACcACGCuCGAGUUc -3' miRNA: 3'- uUUUGUUGCuCUGuUGCGcGCUUAGu -5' |
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16441 | 3' | -47 | NC_004084.1 | + | 22802 | 0.66 | 0.987278 |
Target: 5'- cGAAGCGuCGAGAgGGCGUcaCGGAUCGa -3' miRNA: 3'- -UUUUGUuGCUCUgUUGCGc-GCUUAGU- -5' |
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16441 | 3' | -47 | NC_004084.1 | + | 5639 | 0.67 | 0.98541 |
Target: 5'- uGAAGCAcuCGAGGCuGGCGaGCGGAUCc -3' miRNA: 3'- -UUUUGUu-GCUCUG-UUGCgCGCUUAGu -5' |
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16441 | 3' | -47 | NC_004084.1 | + | 8965 | 0.67 | 0.98334 |
Target: 5'- -cGGCGACGaAGACGGCGgGaCGAGggCAg -3' miRNA: 3'- uuUUGUUGC-UCUGUUGCgC-GCUUa-GU- -5' |
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16441 | 3' | -47 | NC_004084.1 | + | 12089 | 0.67 | 0.980815 |
Target: 5'- cGAGCGACGAgGACAugGgaaugauCGCGAacggaGUCAa -3' miRNA: 3'- uUUUGUUGCU-CUGUugC-------GCGCU-----UAGU- -5' |
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16441 | 3' | -47 | NC_004084.1 | + | 25364 | 0.67 | 0.978544 |
Target: 5'- cGAAACGgauCGAcGugAGCGC-CGAGUCAg -3' miRNA: 3'- -UUUUGUu--GCU-CugUUGCGcGCUUAGU- -5' |
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16441 | 3' | -47 | NC_004084.1 | + | 46718 | 0.67 | 0.975795 |
Target: 5'- --cGCGACGAGugGuCGgGCGAgcacAUCGa -3' miRNA: 3'- uuuUGUUGCUCugUuGCgCGCU----UAGU- -5' |
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16441 | 3' | -47 | NC_004084.1 | + | 46193 | 0.68 | 0.972796 |
Target: 5'- uAGGCGGCGAGAUcgucgucgGAUGCGuCGAcgAUCAu -3' miRNA: 3'- uUUUGUUGCUCUG--------UUGCGC-GCU--UAGU- -5' |
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16441 | 3' | -47 | NC_004084.1 | + | 38346 | 0.68 | 0.972482 |
Target: 5'- ---cCAGCGGGACAucauguucugccuACGC-CGGAUCGa -3' miRNA: 3'- uuuuGUUGCUCUGU-------------UGCGcGCUUAGU- -5' |
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16441 | 3' | -47 | NC_004084.1 | + | 34856 | 0.68 | 0.969538 |
Target: 5'- -cGACAGCGGGG-AGCGCGauaucgucCGAAUCGa -3' miRNA: 3'- uuUUGUUGCUCUgUUGCGC--------GCUUAGU- -5' |
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16441 | 3' | -47 | NC_004084.1 | + | 26994 | 0.68 | 0.96601 |
Target: 5'- ----gAACGAGACAACGCGauccUCAc -3' miRNA: 3'- uuuugUUGCUCUGUUGCGCgcuuAGU- -5' |
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16441 | 3' | -47 | NC_004084.1 | + | 43558 | 0.68 | 0.962204 |
Target: 5'- cGAGAcCGGCGGccgucaucccGACGAgGCGCGGAUCc -3' miRNA: 3'- -UUUU-GUUGCU----------CUGUUgCGCGCUUAGu -5' |
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16441 | 3' | -47 | NC_004084.1 | + | 41743 | 0.68 | 0.962204 |
Target: 5'- -uGACGAuCGGGACGACGCcgGCGAc--- -3' miRNA: 3'- uuUUGUU-GCUCUGUUGCG--CGCUuagu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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